HHsearch alignment for GI: 254780646 and conserved domain: PRK12278
>PRK12278 50S ribosomal protein L21/unknown domain fusion protein; Provisional.
Probab=100.00 E-value=2.2e-42 Score=257.30 Aligned_cols=102 Identities=51% Similarity=0.876 Sum_probs=95.9
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEE-ECC
Q ss_conf 9679999988889769989998244678997213042145306885122674337867999999634567389999-638
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFK-KRR 79 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK-~kr 79 (103)
T Consensus 1 MyAII~tGGKQYkV~~Gd~l~Vekl~~e~G~~v~fd~VLlv~~-~~~~vG~P~v~gA~V~A~Vle~~kg~KvivfkKkRR 79 (216)
T PRK12278 1 MFAVIKTGGKQYKVAAGDTLRVEKLAAEAGETVQFNDVLMLGG-ENVTVGAPFVDGAAVQAEVVEQIKGRKVIHFVKRRR 79 (216)
T ss_pred CEEEEEECCEEEEECCCCEEEEEECCCCCCCEEEEEEEEEECC-CCCEECCCCCCCCEEEEEEEEECCCCEEEEEEEECC
T ss_conf 9799996998999848999999602789999988606799869-983589642468789999985036855999998227
Q ss_pred CCCCEEECCCCCCCEEEEEEEEEC
Q ss_conf 887166427457600999967619
Q gi|254780646|r 80 RQNYRRTHGHRQEMTVVRITSIVT 103 (103)
Q Consensus 80 RK~yrr~~GhRq~~T~ikI~~I~s 103 (103)
T Consensus 80 kk~yrRk~GHRQ~~T~ikI~~Ila 103 (216)
T PRK12278 80 KHSSRRTKGHRQKLTLVRITEILA 103 (216)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 877647777578864799988635