Query gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 103
No_of_seqs 103 out of 1616
Neff 5.4
Searched_HMMs 23785
Date Tue May 31 18:29:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780646.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ofq_R 50S ribosomal protein L 100.0 8.7E-43 0 258.4 5.8 103 1-103 1-103 (103)
2 3bbo_T Ribosomal protein L21; 100.0 1.1E-42 0 257.7 -0.6 102 1-102 124-226 (257)
3 2j01_V 50S ribosomal protein L 100.0 6.6E-40 2.8E-44 242.3 -0.6 100 1-102 1-100 (101)
4 2zjr_O 50S ribosomal protein L 100.0 1.3E-38 5.3E-43 235.1 5.4 99 1-102 1-99 (100)
5 2out_A MU-like prophage flumu 98.6 7.3E-09 3.1E-13 68.9 2.4 37 65-102 2-38 (131)
6 3cew_A Uncharacterized cupin p 46.8 15 0.00065 16.9 3.4 23 3-25 59-81 (125)
7 2arc_A ARAC, arabinose operon 43.4 18 0.00074 16.5 4.0 23 3-25 49-71 (164)
8 2gu9_A Tetracenomycin polyketi 32.5 27 0.0011 15.5 3.6 23 3-25 55-77 (113)
9 1yhf_A Hypothetical protein SP 30.7 29 0.0012 15.4 3.8 22 3-24 71-92 (115)
10 1b5f_B Protein (cardosin A); h 27.1 19 0.00078 16.4 1.2 56 4-62 17-75 (87)
11 3jzv_A Uncharacterized protein 25.2 36 0.0015 14.8 4.0 23 3-25 84-106 (166)
12 2pfw_A Cupin 2, conserved barr 24.4 38 0.0016 14.7 4.0 22 3-24 65-86 (116)
13 2ivw_A PILP pilot protein; lip 23.6 39 0.0016 14.6 3.3 38 1-38 39-78 (113)
14 1sfn_A Conserved hypothetical 22.3 41 0.0017 14.5 3.8 21 3-23 79-99 (246)
15 1rc6_A Hypothetical protein YL 22.1 42 0.0018 14.5 2.5 22 3-24 92-113 (261)
No 1
>3ofq_R 50S ribosomal protein L21; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=100.00 E-value=8.7e-43 Score=258.35 Aligned_cols=103 Identities=42% Similarity=0.700 Sum_probs=101.8
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf 96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR 80 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR 80 (103)
|||||++||+||||++||+|.+|++++++||+++|++|||+++++++.+|+|+|+||+|+|+|++|.||+||++||||||
T Consensus 1 MyAIi~~gGkQykV~~gd~l~v~~l~~~~G~~i~l~~VLl~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krr 80 (103)
T 3ofq_R 1 MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANGEEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRR 80 (103)
T ss_dssp CCCCEECSSSEECCCSSCCEEEECCSCCTTCEEEECCBSCCCTTSCCCCSSSSCSSCEEEEEEEEEEECCCCCEECCBTT
T ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCEEEEHHHEECCCCCCEEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
T ss_conf 99999979999999389999993568899999997454691699847989855467699999974057872189996387
Q ss_pred CCCEEECCCCCCCEEEEEEEEEC
Q ss_conf 87166427457600999967619
Q gi|254780646|r 81 QNYRRTHGHRQEMTVVRITSIVT 103 (103)
Q Consensus 81 K~yrr~~GhRq~~T~ikI~~I~s 103 (103)
|||+|++||||+||+|+|++|.+
T Consensus 81 k~y~r~~GHRQ~~T~ikI~~I~a 103 (103)
T 3ofq_R 81 KHYRKQQGHRQWFTDVKITGISA 103 (103)
T ss_dssp TTBCCEECCCCEEEEECCCEEEC
T ss_pred CCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 77342576378827999998879
No 2
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.1e-42 Score=257.70 Aligned_cols=102 Identities=39% Similarity=0.573 Sum_probs=100.0
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCC-CCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECC
Q ss_conf 96799999888897699899982446-78997213042145306885122674337867999999634567389999638
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIV-AKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRR 79 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~-~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~kr 79 (103)
|||||++||+||||++||+|.||+|. .++||.|+|++|||+++++++.+|+|+|+||+|+|+|++|+||+||++|||||
T Consensus 124 MYAII~igGKQYkV~~Gd~i~V~kL~~~e~Gd~I~l~~VLlv~~~~~~~iG~P~l~~a~V~A~Vle~~kg~KviVfK~Kr 203 (257)
T 3bbo_T 124 IFAVVVIGSRQYIVIPGRWIYTQRLKGATVNDKIVLNKVLLVGTKASTYIGTPIVTNAAVHAVVEEQLLDDKVIVFKYKK 203 (257)
T ss_dssp CCCCCCSSSCCCCCCTTCCCCCCCCTTSCTTCEEECTTCCCBCSSSCBCCSSSSCSSCCCEEECCCCCCCSCCCEEECCT
T ss_pred EEEEEEECCEEEEECCCCEEEECCCCCCCCCCEEEEEEEEEEECCCCEEECCCCCCCCEEEEEEEEECCCCCEEEEEECC
T ss_conf 69999989999998389999980678999999899733599848996587886567758999997304678679999369
Q ss_pred CCCCEEECCCCCCCEEEEEEEEE
Q ss_conf 88716642745760099996761
Q gi|254780646|r 80 RQNYRRTHGHRQEMTVVRITSIV 102 (103)
Q Consensus 80 RK~yrr~~GhRq~~T~ikI~~I~ 102 (103)
||||||++||||+||+|+|++|.
T Consensus 204 RK~yrRk~GHRQ~~T~IkI~~I~ 226 (257)
T 3bbo_T 204 KKNYRRNIGHRQPITRIKITGIT 226 (257)
T ss_dssp TTTCCEEECCCCCCCCCCCCCCC
T ss_pred CCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 98753678717781699997986
No 3
>2j01_V 50S ribosomal protein L21; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.155.1.1 PDB: 1vsp_P 2hgj_U 2hgq_U 2hgu_U 1vsa_P 2j03_V 2jl6_V 2jl8_V 2v47_V 2v49_V 2wdi_V 2wdj_V 2wdl_V 2wdn_V 2wh2_V 2wh4_V 2wrj_V 2wrl_V 2wro_V 2wrr_V ...
Probab=100.00 E-value=6.6e-40 Score=242.26 Aligned_cols=100 Identities=44% Similarity=0.582 Sum_probs=94.9
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf 96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR 80 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR 80 (103)
|||||++||+||||++||+|.+|++++++|+.++|+.+|+. ++++.+|+|+|+||+|+|+|++|.+|+||++||||||
T Consensus 1 MyAIi~~gGkQykV~~Gd~i~v~~l~~~~G~~i~~~~vl~~--~~~~~iG~P~l~~a~V~a~Vl~~~k~~Kv~vfK~krR 78 (101)
T 2j01_V 1 MFAIVKTGGKQYRVEPGLKLRVEKLDAEPGATVELPVLLLG--GEKTVVGTPVVEGASVVAEVLGHGRGKKILVSKFKAK 78 (101)
T ss_dssp CCCEEEETTEEEECCSSCCCCCCCCSCCSSSCCBCCCCSCC--CSSTTCCCCCGGGCSSCCCCEECCCCCCCCCCCCCEE
T ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCEEEEEEEEEC--CCCEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCC
T ss_conf 99999979999999599999991438789999999999996--8826888965777699999997348894999996698
Q ss_pred CCCEEECCCCCCCEEEEEEEEE
Q ss_conf 8716642745760099996761
Q gi|254780646|r 81 QNYRRTHGHRQEMTVVRITSIV 102 (103)
Q Consensus 81 K~yrr~~GhRq~~T~ikI~~I~ 102 (103)
|+|||++||||+||+|+|++|.
T Consensus 79 K~y~r~~GHRQ~~T~v~I~~I~ 100 (101)
T 2j01_V 79 VQYRRKKGHRQPYTELLIKEIR 100 (101)
T ss_dssp CCCCEECCCCCCCCCCCCEECC
T ss_pred CCCCCCCCCCCCCEEEEEEEEE
T ss_conf 8854678507882799998767
No 4
>2zjr_O 50S ribosomal protein L21; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.155.1.1 PDB: 1nwx_P* 1nwy_P* 1pnu_P 1pny_P 1sm1_P* 1vor_S 1vou_S 1vow_S 1voy_S 1vp0_S 1xbp_P* 1yl3_2 2b66_V 2b9n_V 2b9p_V 2zjp_O* 2zjq_O 1nkw_P 3cf5_O* 3dll_O*
Probab=100.00 E-value=1.3e-38 Score=235.13 Aligned_cols=99 Identities=39% Similarity=0.550 Sum_probs=92.5
Q ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEEECCCCCEECCCCCCCCEEEEEEEECCCCCCEEEEEECCC
Q ss_conf 96799999888897699899982446789972130421453068851226743378679999996345673899996388
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRR 80 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~~~~~~~~iG~P~l~~a~V~a~V~~~~k~~Ki~vfK~krR 80 (103)
|||||++||+||||++||+|.||++++++|+.++|+.||+. ++ ..+|.|++++|+|+|+|++|++++|+++||||||
T Consensus 1 MyAIi~~gGKQykV~~Gd~l~ve~l~~~~G~~i~~~~vl~~--g~-~~~~~~~~~~a~V~a~V~~~~k~~Ki~v~K~krr 77 (100)
T 2zjr_O 1 MFAIIQTGGKQYRVSEGDVIRVESLQGEAGDKVELKALFVG--GE-QTVFGEDAGKYTVQAEVVEHGRGKKIYIRKYKSG 77 (100)
T ss_dssp ----CCSSCCSCCSCCEEEEECCSCCSSCCEEEECCSCEET--TS-CEECSSTTTTSCEEEEEEECCBCCCEEEEEECSS
T ss_pred CEEEEEECCEEEEECCCCEEEEECCCCCCCCEEEEEEEEEC--CC-CEEECCCCCEEEEEEEEECCCCCCEEEEEEECCC
T ss_conf 98999979999999589999992468889999999987873--87-2282788844699999980146887999995287
Q ss_pred CCCEEECCCCCCCEEEEEEEEE
Q ss_conf 8716642745760099996761
Q gi|254780646|r 81 QNYRRTHGHRQEMTVVRITSIV 102 (103)
Q Consensus 81 K~yrr~~GhRq~~T~ikI~~I~ 102 (103)
|||||++||||+||+|+|++|.
T Consensus 78 K~yrr~~GHRQ~~T~i~I~~I~ 99 (100)
T 2zjr_O 78 VQYRRRTGHRQNFTAIKILGIQ 99 (100)
T ss_dssp SCCEEEEEECCBEEEEECCCC-
T ss_pred CCCCCCCCCCCCEEEEEEEEEE
T ss_conf 7732577427880799998676
No 5
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=98.65 E-value=7.3e-09 Score=68.93 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=34.7
Q ss_pred ECCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEEEE
Q ss_conf 63456738999963888716642745760099996761
Q gi|254780646|r 65 KQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIV 102 (103)
Q Consensus 65 ~~~k~~Ki~vfK~krRK~yrr~~GhRq~~T~ikI~~I~ 102 (103)
.|.+++|+++|+.|||+||| ++||||.++++.|.+|.
T Consensus 2 sHlk~dkvIVfkkKrrkGYR-rnGh~q~l~e~~i~~i~ 38 (131)
T 2out_A 2 SHMDKTFCVVVQNRIKEGYR-RAGFSFHLGDNSLAAVS 38 (131)
T ss_dssp CCSSCCBCEEEECCSCSCCC-CSSSCCCSSEEECCCBS
T ss_pred CCCCCCEEEEEEECCCCHHH-HCCHHHHHHHHHHHHHH
T ss_conf 76668768998733630475-50156631488899998
No 6
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, PSI-2, protein structure initiative; 2.31A {Bacteroides fragilis nctc 9343}
Probab=46.77 E-value=15 Score=16.88 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.0
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+..+|+.+.+++||.+.++.-
T Consensus 59 ~~~~v~g~~~~l~~Gd~i~vp~g 81 (125)
T 3cew_A 59 GFITIDGEKIELQAGDWLRIAPD 81 (125)
T ss_dssp EEEEETTEEEEEETTEEEEECTT
T ss_pred EEEEECCEEEEEECCEEEEECCC
T ss_conf 99999999999338869998998
No 7
>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A
Probab=43.37 E-value=18 Score=16.55 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=20.2
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+.++|++|.+.+||.+.++.-
T Consensus 49 g~~~i~g~~y~l~~Gdl~li~P~ 71 (164)
T 2arc_A 49 GVVKNQGREFVCRPGDILLFPPG 71 (164)
T ss_dssp EEEEETTEEEEECTTCEEEECTT
T ss_pred EEEEECCEEEEECCCEEEEECCC
T ss_conf 99999999999569909997799
No 8
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=32.48 E-value=27 Score=15.55 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=19.6
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+.++|+.+.+.+||.+.++.-
T Consensus 55 ~~~~~~g~~~~l~~Gd~~~ip~~ 77 (113)
T 2gu9_A 55 GEAIVDGHTQALQAGSLIAIERG 77 (113)
T ss_dssp EEEEETTEEEEECTTEEEEECTT
T ss_pred EEEEECCEEEEECCCCEEECCCC
T ss_conf 99987998798059962786998
No 9
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 2.00A {Streptococcus pyogenes m1 gas} SCOP: b.82.1.9
Probab=30.71 E-value=29 Score=15.38 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=15.2
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+.+.+.+||.+.++.
T Consensus 71 ~~~~~~~~~~~l~~Gd~~~vp~ 92 (115)
T 1yhf_A 71 AEITIDQETYRVAEGQTIVMPA 92 (115)
T ss_dssp EEEEETTEEEEEETTCEEEECT
T ss_pred EEEEEEEEEEECCCCCEEEECC
T ss_conf 9999986899815996999899
No 10
>1b5f_B Protein (cardosin A); hydrolase(aspartic proteinase),; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=27.13 E-value=19 Score=16.42 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=32.4
Q ss_pred EEEECCEEEEECCCCEEEEECCCCCCCCCEEHHHEEEE---ECCCCCEECCCCCCCCEEEEE
Q ss_conf 99999888897699899982446789972130421453---068851226743378679999
Q gi|254780646|r 4 IIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAV---GKDEHLSVGTPRVEGAYVEAE 62 (103)
Q Consensus 4 Ii~~gGkQykV~~Gd~l~v~~l~~~~G~~i~l~~VL~~---~~~~~~~iG~P~l~~a~V~a~ 62 (103)
.+.+||+.|.+.+.+.+.-.... +...-.-.+... ..+....+|.|++.++.+.-.
T Consensus 17 ~F~~~g~~~~i~p~~yi~~~~~~---~~~~c~~~~~~~~~~~~~~~~ILGd~Flr~~y~vfD 75 (87)
T 1b5f_B 17 SFTIGGKKFGLTPEQYILKVGKG---EATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFD 75 (87)
T ss_dssp EEEETTEEEEECHHHHEEEESCT---TTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEE
T ss_pred EEEECCEEEEECHHHEEEEECCC---CCEEEEEEEEECCCCCCCCCEEECHHHHCCEEEEEE
T ss_conf 99999999998869829885269---920656778977889898518971663516999998
No 11
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, protein structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum atcc 11170}
Probab=25.17 E-value=36 Score=14.81 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.6
Q ss_pred EEEEECCEEEEECCCCEEEEECC
Q ss_conf 79999988889769989998244
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEKI 25 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~l 25 (103)
+.+.++|+.|.+.+||.+.++.-
T Consensus 84 g~~~~~g~~~~l~~Gd~i~ip~~ 106 (166)
T 3jzv_A 84 GHAMVGRAVSAVAPYDLVTIPGW 106 (166)
T ss_dssp EEEEETTEEEEECTTCEEEECTT
T ss_pred EEEEECCEEEEECCCCEEEECCC
T ss_conf 67998757789269979998999
No 12
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina ncimb 400}
Probab=24.35 E-value=38 Score=14.72 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=17.9
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+.+.+.+||.+.++.
T Consensus 65 ~~~~~~g~~~~l~~Gd~~~ip~ 86 (116)
T 2pfw_A 65 FHVNVDGVIKVLTAGDSFFVPP 86 (116)
T ss_dssp EEEEETTEEEEECTTCEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
T ss_conf 9999899999975984999896
No 13
>2ivw_A PILP pilot protein; lipoprotein, pilus biogenesis, secretin; NMR {Neisseria meningitidis}
Probab=23.60 E-value=39 Score=14.64 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=24.1
Q ss_pred CEEEEEECCEEEEECCCCEEEEE--CCCCCCCCCEEHHHE
Q ss_conf 96799999888897699899982--446789972130421
Q gi|254780646|r 1 MFAIIEHGGKQSRVSATDTITVE--KIVAKDGDNIRFDNV 38 (103)
Q Consensus 1 MyAIi~~gGkQykV~~Gd~l~v~--~l~~~~G~~i~l~~V 38 (103)
.+|+|...|+=|+|..|+.+=.+ ++-.-..+.|.+.+.
T Consensus 39 ~~aLv~pdG~v~~V~~G~yiG~n~GrI~~I~~~~I~l~E~ 78 (113)
T 2ivw_A 39 VSGFIEAEGYVYTVGVGNYLGQNYGRIESITDDSIVLNEL 78 (113)
T ss_dssp EEEEEEETTEEEEECSSEEETTTEEEEEEEETTEEEEEEE
T ss_pred EEEEEECCCCEEEECCCCEECCCCCEEEEEECCEEEEEEE
T ss_conf 8999958998999710888355787999995993999999
No 14
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein structure initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=22.31 E-value=41 Score=14.49 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=15.9
Q ss_pred EEEEECCEEEEECCCCEEEEE
Q ss_conf 799999888897699899982
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVE 23 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~ 23 (103)
+.+.++|+.+-+.+||.+.++
T Consensus 79 ~~~~~~g~~~~l~~G~~~~~P 99 (246)
T 1sfn_A 79 VDVAVGGETRTLREYDYVYLP 99 (246)
T ss_dssp EEEECSSCEEEECTTEEEEEC
T ss_pred EEEEECCEEEEEECCCEEEEC
T ss_conf 999999999997089999968
No 15
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, target T1521, PSI, protein structure initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=22.11 E-value=42 Score=14.46 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=19.1
Q ss_pred EEEEECCEEEEECCCCEEEEEC
Q ss_conf 7999998888976998999824
Q gi|254780646|r 3 AIIEHGGKQSRVSATDTITVEK 24 (103)
Q Consensus 3 AIi~~gGkQykV~~Gd~l~v~~ 24 (103)
+.+.++|+.+.+.+||.+.++-
T Consensus 92 ~~~~~~g~~~~l~~Gd~~~~p~ 113 (261)
T 1rc6_A 92 ITAKAEGKTFALSEGGYLYCPP 113 (261)
T ss_dssp EEEEETTEEEEEETTEEEEECT
T ss_pred EEEEECCEEEEECCCCEEEECC
T ss_conf 9999999999974898999679
Done!