RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21
[Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)



>gnl|CDD|180138 PRK05573, rplU, 50S ribosomal protein L21; Validated.
          Length = 103

 Score =  136 bits (346), Expect = 9e-34
 Identities = 57/102 (55%), Positives = 71/102 (69%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
           M+AII+ GGKQ +V   D I VEK+ A+ GD + FD VL VG  E + +G P VEGA V 
Sbjct: 1   MYAIIKTGGKQYKVEEGDVIKVEKLDAEVGDTVEFDEVLLVGGGEEVKIGAPYVEGAKVT 60

Query: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIV 102
           AEVV+  R KKV+VFK +RR+NYR+  GHRQ  T V+ITSI 
Sbjct: 61  AEVVEHGRGKKVIVFKYKRRKNYRKKQGHRQPYTKVKITSIN 102


>gnl|CDD|171362 PRK12278, PRK12278, 50S ribosomal protein L21/unknown domain fusion
           protein; Provisional.
          Length = 221

 Score =  130 bits (328), Expect = 8e-32
 Identities = 53/103 (51%), Positives = 79/103 (76%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
           MFA+I+ GGKQ +V A D + VEK+ A+ G+ ++F  VL +G+ ++++VG P V+GA V+
Sbjct: 1   MFAVIKTGGKQYKVQAGDLLRVEKLAAEAGETVQFGEVLMLGEGDNVTVGAPFVDGAAVQ 60

Query: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT 103
           AEV++Q++  KV+ FKKRRRQ+ RRT GHRQ +T+VRIT I+ 
Sbjct: 61  AEVIEQIKGDKVIHFKKRRRQSSRRTKGHRQLLTLVRITEILA 103


>gnl|CDD|129171 TIGR00061, L21, ribosomal protein L21.  Eubacterial and
           chloroplast.
          Length = 101

 Score = 98.6 bits (246), Expect = 3e-22
 Identities = 50/101 (49%), Positives = 65/101 (64%)

Query: 2   FAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEA 61
           +AI+E GGKQ +V    T+ +EK+ A  GD + FD VL V K   + +G P VEGA V A
Sbjct: 1   YAIVEIGGKQYKVEEGQTVRIEKLDAAPGDTVEFDKVLMVNKGGDVKIGKPYVEGAKVVA 60

Query: 62  EVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIV 102
           EV K  R KKV V+K RRR++ R+  GHRQ  T V++T IV
Sbjct: 61  EVEKHGRGKKVKVYKYRRRKHSRKKQGHRQPYTKVKVTKIV 101


>gnl|CDD|147906 pfam05999, Herpes_U5, Herpesvirus U5-like family.  This family of
           Herpesvirus includes U4, U5 and UL27.
          Length = 447

 Score = 26.7 bits (59), Expect = 1.2
 Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 44  DEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTH 87
           DE LS  T    G  V A   + ++  +V   ++  RQ      
Sbjct: 397 DEELS-NTRLWNGPNVVAAAFRGVKYFEVEKDERAVRQKLGSLR 439


>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
          Length = 499

 Score = 26.6 bits (58), Expect = 1.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 67 LRTKKVVVFKKRRRQNYRRTHG 88
          LR +K    +++RR   +R HG
Sbjct: 38 LRKEKACALRQQRRHRLQRQHG 59


>gnl|CDD|177600 PHA03362, PHA03362, single-stranded binding protein UL29;
            Provisional.
          Length = 1189

 Score = 25.8 bits (57), Expect = 2.4
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 3    AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLS 48
            AI++ GG   + +        K++ + G ++  D+ LA+  DE+L+
Sbjct: 1046 AILDSGGAAVQTAVY--AAALKMLGERGQHMELDDWLALVDDEYLA 1089


>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1.  This model
           represents the full length, over a thousand amino acids,
           of a multicopy family of eukaryotic proteins, many of
           which are designated ubiquitin-activating enzyme E1.
           Members have two copies of the ThiF family domain
           (pfam00899), a repeat found in ubiquitin-activating
           proteins (pfam02134), and other regions.
          Length = 1008

 Score = 25.2 bits (55), Expect = 3.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 48  SVGTPRVEGAYVEAEVVKQLRTKKVVVFKKRRRQ 81
           S+G     G Y+   +  Q++T K V FK  R Q
Sbjct: 230 SIGDTTELGPYLHGGIATQVKTPKTVFFKSLREQ 263


>gnl|CDD|132014 TIGR02969, mam_aldehyde_ox, aldehyde oxidase.  Members of this family
            are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes,
            closely related to xanthine dehydrogenase/oxidase.
          Length = 1330

 Score = 24.6 bits (53), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)

Query: 29   DGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
            D  NIR D V+ VG   + ++   +VEGA+++
Sbjct: 1171 DHKNIRTDIVMDVGHSINPALDIGQVEGAFIQ 1202


>gnl|CDD|184763 PRK14607, PRK14607, bifunctional glutamine
          amidotransferase/anthranilate
          phosphoribosyltransferase; Provisional.
          Length = 534

 Score = 24.3 bits (53), Expect = 6.4
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 12/68 (17%)

Query: 3  AIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAE 62
           I E G ++  V   D IT+E+I A +  +I             +S G  R E A +  E
Sbjct: 18 YIGELGPEEIEVVRNDEITIEEIEALNPSHIV------------ISPGPGRPEEAGISVE 65

Query: 63 VVKQLRTK 70
          V++    K
Sbjct: 66 VIRHFSGK 73


>gnl|CDD|118040 pfam09504, RE_Bsp6I, Bsp6I restriction endonuclease.  This family
           includes the Bsp6I (recognizes and cleaves GC^NGC)
           restriction endonucleases.
          Length = 180

 Score = 24.5 bits (53), Expect = 6.5
 Identities = 8/39 (20%), Positives = 20/39 (51%)

Query: 40  AVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKVVVFKKR 78
           A G+  H+S+    VE   +E +++  +R  +++   + 
Sbjct: 142 AQGRRPHVSLQKLFVEANDIEPDIIFDIRRCRIIEDNRL 180


>gnl|CDD|185189 PRK15289, lpfA, fimbrial protein; Provisional.
          Length = 190

 Score = 24.1 bits (52), Expect = 8.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)

Query: 33  IRFDNVLAVGKDEHLSVGTP 52
           +RFD   A G D  L VGTP
Sbjct: 88  VRFDGTEAPGGDGDLKVGTP 107


>gnl|CDD|162841 TIGR02401, trehalose_TreY, malto-oligosyltrehalose synthase.  This
           enzyme, formally named (1->4)-alpha-D-glucan
           1-alpha-D-glucosylmutase, is the TreY enzyme of the
           TreYZ pathway of trehalose biosynthesis, an alternative
           to the OtsAB pathway. Trehalose may be incorporated into
           more complex compounds but is best known as compatible
           solute. It is one of the most effective osmoprotectants,
           and unlike the various betaines does not require
           nitrogen for its synthesis.
          Length = 825

 Score = 23.9 bits (52), Expect = 10.0
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 52  PRVEGAYVEAEVVKQLRTKKVVVFKKRRRQNYRRTH 87
           P   G   E EV++ +      + K   RQ+YR T 
Sbjct: 167 PLAPGTLPELEVLEDVPGDGDALKKLLERQHYRLTW 202


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,629,391
Number of extensions: 92280
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 31
Length of query: 103
Length of database: 5,994,473
Length adjustment: 70
Effective length of query: 33
Effective length of database: 4,481,913
Effective search space: 147903129
Effective search space used: 147903129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.0 bits)