BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21
[Candidatus Liberibacter asiaticus str. psy62]
         (103 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780646|ref|YP_003065059.1| 50S ribosomal protein L21 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 103

 Score =  206 bits (524), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60
           MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE
Sbjct: 1   MFAIIEHGGKQSRVSATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVE 60

Query: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT 103
           AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT
Sbjct: 61  AEVVKQLRTKKVVVFKKRRRQNYRRTHGHRQEMTVVRITSIVT 103


>gi|254780771|ref|YP_003065184.1| UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 347

 Score = 23.9 bits (50), Expect = 0.63,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 15  SATDTITVEKIVAKDGDNIRFDNVLAVGKDEHLSVG 50
           SA D  T++  +   G+N + DN + +G + H+  G
Sbjct: 231 SAIDRGTIDDTII--GENTKIDNQVQIGHNVHIGCG 264


>gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 556

 Score = 21.9 bits (45), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 3/34 (8%)

Query: 19  TITVEKIVAKDGDNI---RFDNVLAVGKDEHLSV 49
           T TV++IV+K GD +   +  + LA  ++E  ++
Sbjct: 180 TFTVDQIVSKWGDKVLSSKMKSALARNENERFTI 213


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 21.6 bits (44), Expect = 3.4,   Method: Composition-based stats.
 Identities = 5/15 (33%), Positives = 13/15 (86%)

Query: 81  QNYRRTHGHRQEMTV 95
           Q+Y+++H H++E+ +
Sbjct: 124 QDYKQSHQHKEEVAL 138


>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 385

 Score = 20.8 bits (42), Expect = 6.3,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 29  DGDNIRFDNVLAVGKDEHLSVGTPRVEGAYVEAEVVKQLRTKKV 72
           DG+   + NV+    D+ L V    +  A     ++  +R + V
Sbjct: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.133    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,181
Number of Sequences: 1233
Number of extensions: 1906
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 103
length of database: 328,796
effective HSP length: 62
effective length of query: 41
effective length of database: 252,350
effective search space: 10346350
effective search space used: 10346350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 32 (16.9 bits)