HHsearch alignment for GI: 254780647 and conserved domain: PRK05435
>PRK05435 rpmA 50S ribosomal protein L27; Validated.
Probab=100.00 E-value=3e-43 Score=259.36 Aligned_cols=85 Identities=66% Similarity=1.063 Sum_probs=81.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEE
Q ss_conf 96014567606789887425324542781953796899723888937766075686756352256899876368883289
Q gi|254780647|r 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYV 80 (90)
Q Consensus 1 mA~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V 80 (90)
T Consensus 1 mA~KK~~GStkNgrdS~~krLGvK~~~gq~V~~G~IivRQRGtk~~pG~nVg~GkD~TlfA~~~G~V~F~~-~~~~rk~V 79 (85)
T PRK05435 1 MAHKKGGGSSRNGRDSESKRLGVKRFGGQFVLAGNIIVRQRGTKFHPGVNVGMGKDHTLFALVDGVVKFEK-GKKNRKYV 79 (85)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCEEEEEECCCCCCCCCCEEECCCCCEEEEEEEEEEEEE-CCCCCEEE
T ss_conf 97333666568898898857533836997975883999934772417899888778838982036999999-99999899
Q ss_pred EEECCC
Q ss_conf 976154
Q gi|254780647|r 81 SVIPKI 86 (90)
Q Consensus 81 ~V~P~~ 86 (90)
T Consensus 80 sV~p~~ 85 (85)
T PRK05435 80 SVYAAE 85 (85)
T ss_pred EEEECC
T ss_conf 999697