HHsearch alignment for GI: 254780647 and conserved domain: pfam03961

>pfam03961 DUF342 Protein of unknown function (DUF342). This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.

Probab=90.70  E-value=0.95  Score=25.26  Aligned_cols=52  Identities=25%  Similarity=0.372  Sum_probs=39.8

Q ss_pred             CEECCCCEEEEC----------------------CCCEEECCCCEEECC-C-CEEEECCCCEEEEEEECCCCCCEEEEEC
Q ss_conf             195379689972----------------------388893776607568-6-7563522568998763688832899761
Q gi|254780647|r   29 QSVIAGNIIIRQ----------------------RGTRYHPGLNVGLGK-D-HTIYALVDGHVRFFKKFSKGRAYVSVIP   84 (90)
Q Consensus        29 q~V~~G~IivRQ----------------------RGtk~~PG~nVg~Gk-D-~TLfA~~~G~V~f~~~~~~~r~~V~V~P   84 (90)
T Consensus       106 ~~V~~G~~la~~~p~~~G~~G~~V~G~~i~~~~g~~~~~~~g~~~~~~~eDg~~liA~~~G~~~~~~~------~i~V~~  179 (450)
T pfam03961       106 ISVKPGDVLARKIPPTPGEPGRTVFGEVIPPKPGKDLPLKAGKGTELSEEDGNKLIATIDGQPVVVKG------GISVDD  179 (450)
T ss_pred             EEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCEEEEECC------EEEEEE
T ss_conf             15889999999848999969821238890489987664307998398269998999954977999899------899999


Q ss_pred             CC
Q ss_conf             54
Q gi|254780647|r   85 KI   86 (90)
Q Consensus        85 ~~   86 (90)
T Consensus       180 vl  181 (450)
T pfam03961       180 VL  181 (450)
T ss_pred             EE
T ss_conf             89