Query gi|254780647|ref|YP_003065060.1| 50S ribosomal protein L27 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 90
No_of_seqs 109 out of 1152
Neff 4.0
Searched_HMMs 33803
Date Wed Jun 1 14:56:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780647.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2zjr_T 50S ribosomal protein 100.0 8.4E-45 0 267.5 7.1 88 1-89 1-88 (91)
2 >1v8q_A TT0826; structural gen 100.0 7.3E-44 0 262.4 6.0 85 1-86 1-85 (85)
3 >2qam_W 50S ribosomal protein 100.0 1.1E-43 0 261.4 -2.1 84 2-85 1-84 (84)
4 >2ftc_O L27MT, MRP-L27, mitoch 100.0 1.4E-36 4E-41 222.3 6.6 68 2-69 1-69 (69)
5 >3bbo_X Ribosomal protein L27; 99.8 2.8E-21 8.3E-26 138.0 -2.9 86 1-87 58-143 (198)
6 >2je6_I RRP4, exosome complex 93.2 0.13 3.7E-06 29.7 4.3 54 25-87 13-67 (70)
7 >2ba0_A Archeal exosome RNA bi 91.3 0.18 5.3E-06 28.9 3.2 49 29-87 3-51 (53)
8 >2ba1_A Archaeal exosome RNA b 89.8 0.51 1.5E-05 26.4 4.4 50 29-87 2-51 (53)
9 >2nn6_H Exosome complex exonuc 89.5 0.21 6.3E-06 28.5 2.3 55 24-87 35-89 (91)
10 >2nn6_I 3'-5' exoribonuclease 88.9 0.13 3.9E-06 29.6 0.8 57 26-89 17-73 (75)
11 >2ogj_A Dihydroorotase; TIM ba 70.0 5.7 0.00017 20.6 3.7 38 34-71 58-95 (149)
12 >1nrf_A Regulatory protein BLA 66.6 1.8 5.4E-05 23.3 0.6 33 39-71 7-42 (128)
13 >1ci3_M Protein (cytochrome F) 35.7 36 0.0011 16.2 3.5 29 59-87 3-31 (62)
14 >1wyh_A SLIM 2, skeletal muscl 32.5 18 0.00052 17.9 1.1 29 21-49 4-33 (39)
15 >2auk_A DNA-directed RNA polym 27.9 36 0.0011 16.2 2.0 18 32-49 81-98 (108)
16 >3iyd_D DNA-directed RNA polym 27.8 15 0.00045 18.3 0.1 49 25-76 89-152 (156)
17 >2gu1_A Zinc peptidase; alpha/ 24.0 58 0.0017 15.0 3.6 31 42-72 23-53 (156)
18 >1eyb_A Homogentisate 1,2-diox 21.2 46 0.0014 15.6 1.5 21 26-46 195-215 (471)
19 >1up8_A Vanadium-dependent bro 20.3 26 0.00077 17.0 0.1 37 5-42 15-51 (56)
No 1
>>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (T:)
Probab=100.00 E-value=8.4e-45 Score=267.54 Aligned_cols=88 Identities=51% Similarity=0.876 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEE
Q ss_conf 96014567606789887425324542781953796899723888937766075686756352256899876368883289
Q gi|254780647|r 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYV 80 (90)
Q Consensus 1 mA~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V 80 (90)
|||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||+||+||||||+++|+|+|+++ .++|+||
T Consensus 1 mA~KK~~GStkNgrdS~~krlGvK~~~gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TL~Al~~G~V~f~~~-~~~r~~V 79 (91)
T 2zjr_T 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINK-GKGARFI 79 (91)
T ss_dssp -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEE-TTTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEECCEEEEEEEC-CCCCEEE
T ss_conf 984346678888988998728878779758716818999437607187872336888588850249999897-8999899
Q ss_pred EEECCCCCC
Q ss_conf 976154235
Q gi|254780647|r 81 SVIPKIEDT 89 (90)
Q Consensus 81 ~V~P~~~~~ 89 (90)
||+|+.+++
T Consensus 80 ~V~p~~~~~ 88 (91)
T 2zjr_T 80 SIEAAQTEV 88 (91)
T ss_dssp EECCCC---
T ss_pred EEEECCCCC
T ss_conf 998588302
No 2
>>1v8q_A TT0826; structural genomics, proteomics, riken structural genomics/proteomics initiative, RSGI, translation; 2.80A {Thermus thermophilus} (A:)
Probab=100.00 E-value=7.3e-44 Score=262.40 Aligned_cols=85 Identities=58% Similarity=0.913 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEE
Q ss_conf 96014567606789887425324542781953796899723888937766075686756352256899876368883289
Q gi|254780647|r 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYV 80 (90)
Q Consensus 1 mA~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V 80 (90)
|||||++|||+|+|||+|||||||+|+||+|.||+||||||||+||||+||+|||||||||+++|+|+|++. .++|++|
T Consensus 1 mA~KK~~GStkNgrdS~~krLGvK~~~gq~V~~G~IivRQRGtk~hPG~nvg~GkD~TlfAl~~G~V~f~~~-~~~r~~V 79 (85)
T 1v8q_A 1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR-GRLGRYV 79 (85)
T ss_dssp -------------------CCEECSCTTCEECTTCEEEECSSCSSEECTTEEECTTCCEEESSSEEEEEEEC-GGGCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCEEEEECCCEEECCCCEEECCCCCEEEECCEEEEEEEC-CCCCEEE
T ss_conf 974346678888988998707687059989707838999447718388885156888288840579998594-9997799
Q ss_pred EEECCC
Q ss_conf 976154
Q gi|254780647|r 81 SVIPKI 86 (90)
Q Consensus 81 ~V~P~~ 86 (90)
||+|.+
T Consensus 80 ~V~p~a 85 (85)
T 1v8q_A 80 HVRPLA 85 (85)
T ss_dssp EEEECC
T ss_pred EEEECC
T ss_conf 999789
No 3
>>2qam_W 50S ribosomal protein L27; RNA-protein complex, ribosome; HET: NMY; 3.21A {Escherichia coli} (W:)
Probab=100.00 E-value=1.1e-43 Score=261.44 Aligned_cols=84 Identities=57% Similarity=0.974 Sum_probs=82.7
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf 60145676067898874253245427819537968997238889377660756867563522568998763688832899
Q gi|254780647|r 2 AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVS 81 (90)
Q Consensus 2 A~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~ 81 (90)
||||++|||+|+|||+|||||||+|+||+|.||+||||||||+||||+||+||+||||||+++|+|+|+++..++|+||+
T Consensus 1 A~KK~~GStkNgrdS~~krlGvK~~~gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TlfAl~~G~V~f~~~~~~~r~~V~ 80 (84)
T 2qam_W 1 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFIS 80 (84)
T ss_dssp -----CCCCCCCCCCCCSCSSCSSCCCCTTCCSBCCTTCSSSSCBCTTCCCCCTTCCBCCCSSSCCCCCCCSSSCCCCBC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCEEEEEECCCCCCCCCCEEECCCCCEEEEECEEEEEEEECCCCCEEEE
T ss_conf 97456576788988987505568659968717808999426617188876355887488850579998682899999999
Q ss_pred EECC
Q ss_conf 7615
Q gi|254780647|r 82 VIPK 85 (90)
Q Consensus 82 V~P~ 85 (90)
|+|+
T Consensus 81 V~pe 84 (84)
T 2qam_W 81 IEAE 84 (84)
T ss_dssp CCCC
T ss_pred EEEC
T ss_conf 9969
No 4
>>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_O (O:)
Probab=100.00 E-value=1.4e-36 Score=222.34 Aligned_cols=68 Identities=56% Similarity=0.912 Sum_probs=67.3
Q ss_pred CCCCCCCCCCC-CCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEE
Q ss_conf 60145676067-898874253245427819537968997238889377660756867563522568998
Q gi|254780647|r 2 AHKKSGGSTQN-GRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRF 69 (90)
Q Consensus 2 A~KK~gGStkN-grdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f 69 (90)
||||++|||+| +|||+|||||||+|+||+|.||+||||||||+||||+||+||+||||||+++|+|+|
T Consensus 1 A~Kk~~GStkN~grds~~krlGvK~~~gq~V~~G~IivRQRgtk~~PG~nv~~GrD~Tl~A~~~G~V~f 69 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEEEECCCCEECCCCEEECCCCCEEEECCEEEEC
T ss_conf 964564646588998876455467359968738818998168818188874198888578700128869
No 5
>>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} (X:)
Probab=99.78 E-value=2.8e-21 Score=137.97 Aligned_cols=86 Identities=57% Similarity=0.888 Sum_probs=78.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEE
Q ss_conf 96014567606789887425324542781953796899723888937766075686756352256899876368883289
Q gi|254780647|r 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYV 80 (90)
Q Consensus 1 mA~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V 80 (90)
+|.++++|+++|+++|.|++|++|+++||+|.+|+||+||++++|+||.++.++||++|+|.++|+|+|.+. .++++++
T Consensus 58 ~~~~~~~g~~~~~~~~~g~~l~ik~~~g~~V~~GdIlakq~~~r~~elfear~pkd~aiiA~i~G~V~~~~~-~~~~~~i 136 (198)
T 3bbo_X 58 SAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKF-GPDRKKI 136 (198)
T ss_dssp -CCCCSSCCCCCCCCCCCCCCSCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSS-CCCCSCC
T ss_pred HHHCCCCCCCCCCCCCCCCCCEEEECCCEEEECCEEEEEECCCCEECCCCCCCCCCCCEEECCCEEEEEEEC-CCCCEEE
T ss_conf 010357667889999986526147459968606808998326715078770388898268705779999985-8998899
Q ss_pred EEECCCC
Q ss_conf 9761542
Q gi|254780647|r 81 SVIPKIE 87 (90)
Q Consensus 81 ~V~P~~~ 87 (90)
.|++...
T Consensus 137 ~v~~~~~ 143 (198)
T 3bbo_X 137 SVYPREI 143 (198)
T ss_dssp CSSCCCC
T ss_pred EEEECCC
T ss_conf 9987863
No 6
>>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} (I:1-70)
Probab=93.19 E-value=0.13 Score=29.72 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=43.5
Q ss_pred EECCCEECCCCEEEECCCCEEECCCCEEE-CCCCEEEECCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf 42781953796899723888937766075-6867563522568998763688832899761542
Q gi|254780647|r 25 KSGGQSVIAGNIIIRQRGTRYHPGLNVGL-GKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIE 87 (90)
Q Consensus 25 ~~~Gq~V~~G~IivRQRGtk~~PG~nVg~-GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~~ 87 (90)
.-.-+.|.||.+|..+ -|.+|.++.+ --|..|+|.+.|.|.... +.|+|+|...
T Consensus 13 ~~~r~iV~PGd~I~~~---~~~~ghGtYv~~e~~~i~asv~G~ve~~n------klvsV~PL~g 67 (70)
T 2je6_I 13 LQPRSIVVPGELLAEG---EFQIPWSPYILKINSKYYSTVVGLFDVKD------TQFEVIPLEG 67 (70)
T ss_dssp CCSSCEECTTCEEEEE---CCCCCCCTTEEEETTEEEECSSEEEEEET------TEEEEEESCC
T ss_pred CCCCEEEECCCCCCCC---CCEECCCCCEEECCCEEEEEEEEEEEEEC------CEEEEEECCC
T ss_conf 5798098189796668---64545889789229999998768999959------9799987888
No 7
>>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} (A:1-53)
Probab=91.30 E-value=0.18 Score=28.86 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=39.7
Q ss_pred CEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf 19537968997238889377660756867563522568998763688832899761542
Q gi|254780647|r 29 QSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIE 87 (90)
Q Consensus 29 q~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~~ 87 (90)
+.|.||.+|..+ .|.||.++.. .|..|+|.+-|.|.... +.|+|.|...
T Consensus 3 ~iV~PGd~i~~~---~~~~G~Gty~-~~~~i~ssv~G~ve~~n------klv~V~Pl~g 51 (53)
T 2ba0_A 3 KIVLPGDLLSTN---PRAAGYGTYV-EGGKVYAKIIGLFDQTE------THVRVIPLKG 51 (53)
T ss_dssp CEECTTCEEESC---TTSBCTTEEE-ETTEEEECSSEEEEECS------SCEEEEECSS
T ss_pred EEEECCCCCCCC---CCCCCCCEEE-ECCEEEEEEEEEEEEEC------CEEEEECCCC
T ss_conf 399398790669---8255897596-09999999868899969------9899944776
No 8
>>2ba1_A Archaeal exosome RNA binding protein CSL4; RNAse PH, RNA degradation, exoribonuclease, RNA binding, S1 domain, Zn-ribbon, phosphorolytic; 2.70A {Archaeoglobus fulgidus} (A:1-53)
Probab=89.84 E-value=0.51 Score=26.38 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=39.7
Q ss_pred CEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf 19537968997238889377660756867563522568998763688832899761542
Q gi|254780647|r 29 QSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIE 87 (90)
Q Consensus 29 q~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~~ 87 (90)
+.|.||.+|-..- .|.||.++.. .|-.|+|.+.|.|.... +.|+|.|...
T Consensus 2 ~iV~PGd~i~~~e--~~~~G~GTy~-~~g~i~ssv~G~v~~~n------klisV~Pl~~ 51 (53)
T 2ba1_A 2 RFVMPGDRIGSAE--EYVKGEGVYE-EGGELFAAVAGKLIIKD------RVAKVESISP 51 (53)
T ss_dssp CEECTTCEEEETT--TSEECTTEEE-ETTEEEESSCEEEEEET------TEEEEEESSC
T ss_pred EEECCCCEECCCC--CEECCCEEEE-ECCEEEEEEECHHHHHC------CCCCCCCCCC
T ss_conf 5978997716475--6865898999-39999999926678206------5000245677
No 9
>>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (H:1-91)
Probab=89.50 E-value=0.21 Score=28.47 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=43.0
Q ss_pred EEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf 5427819537968997238889377660756867563522568998763688832899761542
Q gi|254780647|r 24 KKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIE 87 (90)
Q Consensus 24 K~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~~ 87 (90)
+.-..+.|.||.+|..+- .|.||.++.. .|--|+|.+.|.|.... +.|+|.|..-
T Consensus 35 ~~~~~~iV~PGd~I~~~e--~~~~G~GTy~-~~g~i~Ssv~G~V~~~n------klisV~PL~g 89 (91)
T 2nn6_H 35 RDTKKHLVVPGDTITTDT--GFMRGHGTYM-GEEKLIASVAGSVERVN------KLICVKALKT 89 (91)
T ss_dssp -----CBCCTTCBCCCCT--TCCBCTTEEE-CSSSEEECSSEEEEEET------TEEEEEESSC
T ss_pred CCCCCEEEECCCEECCCC--CEECCCCEEE-ECCEEEEEEEEEEEEEC------CEEEEEECCC
T ss_conf 688866997987931267--7843697699-89999999768999959------9899997997
No 10
>>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (I:1-75)
Probab=88.86 E-value=0.13 Score=29.64 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=43.8
Q ss_pred ECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCCCCC
Q ss_conf 2781953796899723888937766075686756352256899876368883289976154235
Q gi|254780647|r 26 SGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIEDT 89 (90)
Q Consensus 26 ~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~~~~ 89 (90)
-.++.|.||..|-.+- .|.||.++.. .|-.|||.+.|.|.+.+. + +.|+|+|.....
T Consensus 17 ~~~~iv~PGe~L~~~~--~~~~G~GTY~-~~g~I~Ssv~G~v~i~~~---n-k~i~V~p~~~~p 73 (75)
T 2nn6_I 17 PPVRYCIPGERLCNLE--EGSPGSGTYT-RHGYIFSSLAGCLMKSSE---N-GALPVVSVVRET 73 (75)
T ss_dssp ---CCCCTTCEEEETT--TCCCSSSCEE-ETTEEECCSCSCBCCCBC---T-TSSBC-CBCCSC
T ss_pred CCCEEECCCCCCCCCC--CEECCCCEEE-ECCEEEEEEEEEEEEECC---C-CEEEEEEEECCC
T ss_conf 9873985998956667--7506899799-899999986789999578---8-807789972466
No 11
>>2ogj_A Dihydroorotase; TIM barrel, binuclear zinc, imidazole complex, amido hydrolase, structural genomics, PSI-2; HET: KCX; 2.62A {Agrobacterium tumefaciens str} (A:1-72,A:341-417)
Probab=69.95 E-value=5.7 Score=20.59 Aligned_cols=38 Identities=32% Similarity=0.520 Sum_probs=29.6
Q ss_pred CCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEE
Q ss_conf 96899723888937766075686756352256899876
Q gi|254780647|r 34 GNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFK 71 (90)
Q Consensus 34 G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~ 71 (90)
+.-++--.|--.-||.-||.--|+|||-|++--+.-+.
T Consensus 58 ateVIDakGk~VlPG~~~~~~~~~~~~~~~~~~~~~~~ 95 (149)
T 2ogj_A 58 DTQRIDAKGAFISPGLDVGQRADFTVFDLVDADLEATD 95 (149)
T ss_dssp CEEECCC--CEEEECTSTTSBCEEEEEEEEEEEEEEEC
T ss_pred CCEEEECCCCEEECCCCCCCCCCEEEEECCCCCEEEEC
T ss_conf 99799899999957879898778999978989705775
No 12
>>1nrf_A Regulatory protein BLAR1; penicillin-receptor, beta-lactamase induction, penicillin-binding protein, membrane protein; 2.50A {Bacillus licheniformis} (A:1-53,A:188-262)
Probab=66.64 E-value=1.8 Score=23.34 Aligned_cols=33 Identities=33% Similarity=0.478 Sum_probs=26.9
Q ss_pred ECCCCEEECCCCEEECCCCEEEE---CCCCEEEEEE
Q ss_conf 72388893776607568675635---2256899876
Q gi|254780647|r 39 RQRGTRYHPGLNVGLGKDHTIYA---LVDGHVRFFK 71 (90)
Q Consensus 39 RQRGtk~~PG~nVg~GkD~TLfA---~~~G~V~f~~ 71 (90)
-||-|+|.||.||-.--|-|.|- ..-|.|.|..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (128)
T 1nrf_A 7 MQKETRFLPGTNVEYEDYSTFFDKFSASGGFVLFNS 42 (128)
T ss_dssp ------CCSSCEEEECCCHHHHHTTTEEEEEEEEET
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 114554058315689999999997088768999989
No 13
>>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit; HET: HEM; 1.90A {Phormidium laminosum} (M:170-231)
Probab=35.72 E-value=36 Score=16.19 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=21.8
Q ss_pred EEECCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf 63522568998763688832899761542
Q gi|254780647|r 59 IYALVDGHVRFFKKFSKGRAYVSVIPKIE 87 (90)
Q Consensus 59 LfA~~~G~V~f~~~~~~~r~~V~V~P~~~ 87 (90)
+.|-.+|.|.|.....++++.|.|.++.-
T Consensus 3 iiae~~G~V~~i~~~~~~~~~I~i~~~~G 31 (62)
T 1ci3_M 3 YNASAAGVITAIAKADDGSAEVKIRTEDG 31 (62)
T ss_dssp CBCSSCEEEEEEEECTTSCEEEEEECTTS
T ss_pred EECCCCEEEEEEEECCCCCEEEEEECCCC
T ss_conf 72324659988577588977999989999
No 14
>>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} (A:1-39)
Probab=32.55 E-value=18 Score=17.91 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=21.4
Q ss_pred EEEEEEC-CCEECCCCEEEECCCCEEECCC
Q ss_conf 3245427-8195379689972388893776
Q gi|254780647|r 21 LGLKKSG-GQSVIAGNIIIRQRGTRYHPGL 49 (90)
Q Consensus 21 LGvK~~~-Gq~V~~G~IivRQRGtk~~PG~ 49 (90)
.+.|-.+ ++.+.||...++-.|..||+.=
T Consensus 4 f~~kC~~C~~~I~~g~~~~~A~~~~wH~~C 33 (39)
T 1wyh_A 4 GSSGCSACGETVMPGSRKLEYGGQTWHEHC 33 (39)
T ss_dssp CCCBCSSSCCBCCSSSCEECSTTCCEETTT
T ss_pred CCCCCCCCCCEEECCCEEEEECCCEECCCC
T ss_conf 687452589896028599998976377489
No 15
>>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} (A:83-190)
Probab=27.93 E-value=36 Score=16.19 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=7.7
Q ss_pred CCCCEEEECCCCEEECCC
Q ss_conf 379689972388893776
Q gi|254780647|r 32 IAGNIIIRQRGTRYHPGL 49 (90)
Q Consensus 32 ~~G~IivRQRGtk~~PG~ 49 (90)
.+|.||.=+-|.+.+||+
T Consensus 81 P~ga~l~V~dG~~V~~Gd 98 (108)
T 2auk_A 81 PGKAIVQLEDGVQISSGD 98 (108)
T ss_dssp CTTCEESSCTTCEECTTC
T ss_pred CCCEEEEECCCCEECCCC
T ss_conf 999699983989983888
No 16
>>3iyd_D DNA-directed RNA polymerase subunit beta; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12} (D:1021-1176)
Probab=27.77 E-value=15 Score=18.26 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=29.4
Q ss_pred EECCCEECCCCEEEECCCCEEECCCC---------------EEECCCCEEEECCCCEEEEEEECCCC
Q ss_conf 42781953796899723888937766---------------07568675635225689987636888
Q gi|254780647|r 25 KSGGQSVIAGNIIIRQRGTRYHPGLN---------------VGLGKDHTIYALVDGHVRFFKKFSKG 76 (90)
Q Consensus 25 ~~~Gq~V~~G~IivRQRGtk~~PG~n---------------Vg~GkD~TLfA~~~G~V~f~~~~~~~ 76 (90)
.-+||.|.||.+|.+- .||-|.. +..-++..+.|-.+|+|.|.......
T Consensus 89 V~~gq~Ie~Gt~Lt~~---tf~~~gt~DIt~GLPrv~eLfEaR~pk~~aii~~~dG~v~i~~~~~~~ 152 (156)
T 3iyd_D 89 LEDGVQISSGDTLARI---PQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKGK 152 (156)
T ss_dssp CCSSCEECTTCEEEEE---CCCCCCCCCCCCSSTTHHHHTTTCCCSSCCCCCSSCCBCCCCCCSSSC
T ss_pred ECCCCCCCCCCHHHHC---HHHHCCCCHHHCCCHHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCE
T ss_conf 0235544554376524---366546511226867799999862535553265335768873313770
No 17
>>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} (A:206-361)
Probab=24.05 E-value=58 Score=15.03 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=23.5
Q ss_pred CCEEECCCCEEECCCCEEEECCCCEEEEEEE
Q ss_conf 8889377660756867563522568998763
Q gi|254780647|r 42 GTRYHPGLNVGLGKDHTIYALVDGHVRFFKK 72 (90)
Q Consensus 42 Gtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~ 72 (90)
+..+|.|.-+.......++|..+|+|.+...
T Consensus 23 ~~~~h~GiDi~~~~g~~V~A~~~G~V~~~~~ 53 (156)
T 2gu1_A 23 RVVPHNGTDFATPIGAPVYSTGDGKVIVVRK 53 (156)
T ss_dssp CBCCBCSEEECCCTTCEEECSSSEEEEEEEE
T ss_pred CCCCCCCEEEECCCCCEEECCCCCEEEEECC
T ss_conf 5311343587536996231134623576124
No 18
>>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} (A:)
Probab=21.18 E-value=46 Score=15.62 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=14.9
Q ss_pred ECCCEECCCCEEEECCCCEEE
Q ss_conf 278195379689972388893
Q gi|254780647|r 26 SGGQSVIAGNIIIRQRGTRYH 46 (90)
Q Consensus 26 ~~Gq~V~~G~IivRQRGtk~~ 46 (90)
||--.|.+|.|+|=+||++|.
T Consensus 195 fG~L~v~pGd~~VIPRG~~~r 215 (471)
T 1eyb_A 195 FGKXLVQPNEICVIQRGXRFS 215 (471)
T ss_dssp TEEEEECTTEEEEECTTCCEE
T ss_pred CCCEEECCCCEEEECCCCEEE
T ss_conf 511672589789977854798
No 19
>>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} (A:234-289)
Probab=20.35 E-value=26 Score=16.97 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCC
Q ss_conf 45676067898874253245427819537968997238
Q gi|254780647|r 5 KSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRG 42 (90)
Q Consensus 5 K~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRG 42 (90)
++-++..+|+|.-+++-+.|.++|+. ..|.|-+-||=
T Consensus 15 ~~i~~~~~G~~~~~~~~~~~~~dG~I-~YGai~i~qrV 51 (56)
T 1up8_A 15 KQIGSATVGNKTLVSPNAADEFDGEI-AYGSITISQRV 51 (56)
T ss_dssp CCTTCEEETTEEECCTTGGGGGGTEE-EETTEEEECCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEECCCC
T ss_conf 44454544432234644466666764-45767722433
Done!