HHsearch results for GI: 254780647 and protein with PDBid: 2nn6_I

>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=90.17  E-value=0.11  Score=29.17  Aligned_cols=56  Identities=16%  Similarity=0.135  Sum_probs=41.5

Q ss_pred             CCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf             781953796899723888937766075686756352256899876368883289976154
Q gi|254780647|r   27 GGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI   86 (90)
Q Consensus        27 ~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~   86 (90)
                      ...+|.||+.|-.--  .|.||.|+.. .|..|||++-|.|.... ..+....|+|.|..
T Consensus        18 p~~~vlPGd~l~~~e--e~~~G~Gty~-~~g~I~Asv~G~v~~~~-~~~~~~vvsV~~~~   73 (209)
T 2nn6_I           18 PVRYCIPGERLCNLE--EGSPGSGTYT-RHGYIFSSLAGCLMKSS-ENGALPVVSVVRET   73 (209)
T ss_dssp             --CCCCTTCEEEETT--TCCCSSSCEE-ETTEEECCSCSCBCCCB-CTTSSBC-CBCCSC
T ss_pred             CCEEECCCCCCCCCC--CCCCCCCEEE-ECCEEEEEEEEEEEECC-CCCEEEEEEECCCC
T ss_conf             870986998846666--7516799899-89999998777689817-88807789974677