HHsearch results for GI: 254780647 and protein with PDBid: 2nn6_I
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=90.17 E-value=0.11 Score=29.17 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=41.5
Q ss_pred CCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 781953796899723888937766075686756352256899876368883289976154
Q gi|254780647|r 27 GGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI 86 (90)
Q Consensus 27 ~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~ 86 (90)
...+|.||+.|-.-- .|.||.|+.. .|..|||++-|.|.... ..+....|+|.|..
T Consensus 18 p~~~vlPGd~l~~~e--e~~~G~Gty~-~~g~I~Asv~G~v~~~~-~~~~~~vvsV~~~~ 73 (209)
T 2nn6_I 18 PVRYCIPGERLCNLE--EGSPGSGTYT-RHGYIFSSLAGCLMKSS-ENGALPVVSVVRET 73 (209)
T ss_dssp --CCCCTTCEEEETT--TCCCSSSCEE-ETTEEECCSCSCBCCCB-CTTSSBC-CBCCSC
T ss_pred CCEEECCCCCCCCCC--CCCCCCCEEE-ECCEEEEEEEEEEEECC-CCCEEEEEEECCCC
T ss_conf 870986998846666--7516799899-89999998777689817-88807789974677