Query gi|254780647|ref|YP_003065060.1| 50S ribosomal protein L27 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 90
No_of_seqs 109 out of 1152
Neff 4.0
Searched_HMMs 23785
Date Tue May 31 18:14:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780647.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v8q_A TT0826; structural geno 100.0 1.3E-44 0 265.7 6.1 85 1-86 1-85 (85)
2 2zjr_T 50S ribosomal protein L 100.0 3.6E-44 0 263.2 7.1 88 1-89 1-88 (91)
3 2qam_W 50S ribosomal protein L 100.0 5E-43 0 256.9 -2.1 84 2-85 1-84 (84)
4 3bbo_X Ribosomal protein L27; 100.0 1.7E-42 0 254.1 -2.9 87 1-88 58-144 (198)
5 2ftc_O L27MT, MRP-L27, mitocho 100.0 3.2E-37 1.4E-41 224.9 6.2 68 2-69 1-69 (69)
6 3m7n_A Putative uncharacterize 93.1 0.075 3.2E-06 30.1 3.8 50 29-87 2-51 (179)
7 2nn6_H Exosome complex exonucl 92.9 0.057 2.4E-06 30.8 2.9 51 27-86 38-88 (308)
8 2nn6_I 3'-5' exoribonuclease C 90.2 0.11 4.7E-06 29.2 2.0 56 27-86 18-73 (209)
9 2ba0_A Archeal exosome RNA bin 87.2 0.51 2.1E-05 25.5 3.8 48 29-86 3-50 (229)
10 2je6_I RRP4, exosome complex R 74.4 5 0.00021 20.1 5.4 54 26-87 14-67 (251)
11 2z0s_A Probable exosome comple 40.1 4.9 0.00021 20.1 0.0 56 24-87 5-60 (235)
12 1qwy_A Peptidoglycan hydrolase 33.4 24 0.001 16.3 2.6 32 40-71 179-210 (291)
13 2auk_A DNA-directed RNA polyme 22.0 38 0.0016 15.2 2.0 35 25-71 66-100 (190)
14 1eyb_A Homogentisate 1,2-dioxy 20.8 33 0.0014 15.5 1.5 22 26-47 195-216 (471)
No 1
>1v8q_A TT0826; structural genomics, proteomics, riken structural genomics/proteomics initiative, RSGI, translation; 2.80A {Thermus thermophilus} SCOP: b.84.4.1 PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 3fin_0 ...
Probab=100.00 E-value=1.3e-44 Score=265.72 Aligned_cols=85 Identities=58% Similarity=0.913 Sum_probs=81.9
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEE
Q ss_conf 96014567606789887425324542781953796899723888937766075686756352256899876368883289
Q gi|254780647|r 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYV 80 (90)
Q Consensus 1 mA~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V 80 (90)
|||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||+||+||||||+++|+|+|+++ .++|+||
T Consensus 1 MA~KK~~GStkNgrdS~~krLGvK~~ggq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~-~~~r~~V 79 (85)
T 1v8q_A 1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR-GRLGRYV 79 (85)
T ss_dssp -------------------CCEECSCTTCEECTTCEEEECSSCSSEECTTEEECTTCCEEESSSEEEEEEEC-GGGCEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCEEEEECCCEEECCCCEEECCCCEEEEECCEEEEEEEC-CCCCEEE
T ss_conf 985346677788988988606778719989768858999277728188885687788098823579998593-8998799
Q ss_pred EEECCC
Q ss_conf 976154
Q gi|254780647|r 81 SVIPKI 86 (90)
Q Consensus 81 ~V~P~~ 86 (90)
||+|.+
T Consensus 80 ~V~P~a 85 (85)
T 1v8q_A 80 HVRPLA 85 (85)
T ss_dssp EEEECC
T ss_pred EEEECC
T ss_conf 999689
No 2
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 1pnu_U 1pny_U 1vor_X 1vou_X 1vow_X 1voy_X ...
Probab=100.00 E-value=3.6e-44 Score=263.17 Aligned_cols=88 Identities=51% Similarity=0.876 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEE
Q ss_conf 96014567606789887425324542781953796899723888937766075686756352256899876368883289
Q gi|254780647|r 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYV 80 (90)
Q Consensus 1 mA~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V 80 (90)
|||||++|||+|+|||+|||||||+|+||+|.||+||||||||+||||+||+||+||||||+++|+|+|++. .++|+||
T Consensus 1 MA~KK~~GStkNgrds~~KrLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~F~~~-~~~r~~V 79 (91)
T 2zjr_T 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINK-GKGARFI 79 (91)
T ss_dssp -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEE-TTTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEEECCCCEEECCCCEEECCCCEEEEECCEEEEEEEC-CCCCEEE
T ss_conf 985346677778888887526558729979778828999187728088882087888088705559999893-8999899
Q ss_pred EEECCCCCC
Q ss_conf 976154235
Q gi|254780647|r 81 SVIPKIEDT 89 (90)
Q Consensus 81 ~V~P~~~~~ 89 (90)
||+|+.+++
T Consensus 80 sV~p~~~~~ 88 (91)
T 2zjr_T 80 SIEAAQTEV 88 (91)
T ss_dssp EECCCC---
T ss_pred EEEECCCCC
T ss_conf 999798431
No 3
>2qam_W 50S ribosomal protein L27; RNA-protein complex, ribosome; HET: NMY; 3.21A {Escherichia coli} SCOP: b.84.4.1 PDB: 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* 2qp1_W* ...
Probab=100.00 E-value=5e-43 Score=256.95 Aligned_cols=84 Identities=57% Similarity=0.974 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf 60145676067898874253245427819537968997238889377660756867563522568998763688832899
Q gi|254780647|r 2 AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVS 81 (90)
Q Consensus 2 A~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~ 81 (90)
||||++|||+|+|||+|||||||+|+||+|.||+||||||||+||||+||+||+||||||+++|+|+|+++..++|+||+
T Consensus 1 A~KK~~GStkNgrdS~~krLGvK~~~gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~ 80 (84)
T 2qam_W 1 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFIS 80 (84)
T ss_dssp -----CCCCCCCCCCCCSCSSCSSCCCCTTCCSBCCTTCSSSSCBCTTCCCCCTTCCBCCCSSSCCCCCCCSSSCCCCBC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCEEECCCCEEEEECCCEEECCCCCCCCCCCEEEECCCEEEEEEEECCCCCEEEE
T ss_conf 97556566788988987535668809989768859999267728288880187888288735789998683899999999
Q ss_pred EECC
Q ss_conf 7615
Q gi|254780647|r 82 VIPK 85 (90)
Q Consensus 82 V~P~ 85 (90)
|+|+
T Consensus 81 V~~e 84 (84)
T 2qam_W 81 IEAE 84 (84)
T ss_dssp CCCC
T ss_pred EEEC
T ss_conf 9879
No 4
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} SCOP: i.1.1.1
Probab=100.00 E-value=1.7e-42 Score=254.08 Aligned_cols=87 Identities=56% Similarity=0.867 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEE
Q ss_conf 96014567606789887425324542781953796899723888937766075686756352256899876368883289
Q gi|254780647|r 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYV 80 (90)
Q Consensus 1 mA~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V 80 (90)
|||||++|||+|+|||+|||||+|+|+||+|.||+||||||||+||||+||+|||||||||+++|+|+|++. .++|++|
T Consensus 58 ~a~kk~~Gs~~n~rds~~krlGvK~~~gq~v~~G~IivrQrgt~~~pG~nv~~GKD~TI~A~~~G~V~F~k~-~k~kk~V 136 (198)
T 3bbo_X 58 SAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKF-GPDRKKI 136 (198)
T ss_dssp -CCCCSSCCCCCCCCCCCCCCSCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSS-CCCCSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEEECCCCEECCCCCEEECCCCCEEECCCEEEEEEEC-CCCCEEE
T ss_conf 021356667788999986546557619979737828998378725288875016888778656679999983-8999899
Q ss_pred EEECCCCC
Q ss_conf 97615423
Q gi|254780647|r 81 SVIPKIED 88 (90)
Q Consensus 81 ~V~P~~~~ 88 (90)
+|+|..+.
T Consensus 137 ~V~P~d~~ 144 (198)
T 3bbo_X 137 SVYPREIV 144 (198)
T ss_dssp CSSCCCCC
T ss_pred EEEECCCC
T ss_conf 99979867
No 5
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=100.00 E-value=3.2e-37 Score=224.93 Aligned_cols=68 Identities=56% Similarity=0.912 Sum_probs=67.3
Q ss_pred CCCCCCCCCCC-CCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEE
Q ss_conf 60145676067-898874253245427819537968997238889377660756867563522568998
Q gi|254780647|r 2 AHKKSGGSTQN-GRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRF 69 (90)
Q Consensus 2 A~KK~gGStkN-grdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f 69 (90)
||||++|||+| ||||+|||||||+|+||+|.||+||||||||+||||+||+|||||||||+++|+|+|
T Consensus 1 A~KK~~GStkN~grdS~~krlGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GrD~TlfAl~~G~V~F 69 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCEEEEEECCCEECCCCCCCCCCCCCEEECCCEEEEC
T ss_conf 974564657688988887514558619989768828998168818088983298878758613348859
No 6
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=93.11 E-value=0.075 Score=30.12 Aligned_cols=50 Identities=20% Similarity=0.206 Sum_probs=38.6
Q ss_pred CEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf 19537968997238889377660756867563522568998763688832899761542
Q gi|254780647|r 29 QSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIE 87 (90)
Q Consensus 29 q~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~~ 87 (90)
++|.||..|-.- ..|.||.|+. -.|..|||.+.|.|.... ..++|.|...
T Consensus 2 ~~V~PGd~l~~~--ee~~~G~Gty-~~~g~i~As~~G~v~~~~------~~~~V~~~~~ 51 (179)
T 3m7n_A 2 RFVMPGDRIGSA--EEYVKGEGVY-EEGGELFAAVAGKLIIKD------RVAKVESISP 51 (179)
T ss_dssp CEECTTCEEEET--TTSEECTTEE-EETTEEEESSSEEEEEET------TEEEEEESSC
T ss_pred EEECCCCCCCCC--CCEECCCCEE-EECCEEEEEEEEEEEEEC------CCEEECCCCC
T ss_conf 697899785647--6886249889-989999999867799948------9078411688
No 7
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=92.85 E-value=0.057 Score=30.79 Aligned_cols=51 Identities=20% Similarity=0.263 Sum_probs=40.5
Q ss_pred CCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 781953796899723888937766075686756352256899876368883289976154
Q gi|254780647|r 27 GGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI 86 (90)
Q Consensus 27 ~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~ 86 (90)
.-+.|.||..|... ..|.||.++.. .|..|||.+.|.|.... +.|+|.|..
T Consensus 38 ~r~IV~PGd~I~~~--~~~~~G~GTY~-~~g~I~Asv~G~v~~~n------k~VsV~pl~ 88 (308)
T 2nn6_H 38 KKHLVVPGDTITTD--TGFMRGHGTYM-GEEKLIASVAGSVERVN------KLICVKALK 88 (308)
T ss_dssp --CBCCTTCBCCCC--TTCCBCTTEEE-CSSSEEECSSEEEEEET------TEEEEEESS
T ss_pred CCEEEECCCEECCC--CCEECCCCEEE-ECCEEEEEEEEEEEEEC------CEEEEEECC
T ss_conf 84599798780327--87814784799-89999998768999849------979999799
No 8
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=90.17 E-value=0.11 Score=29.17 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=41.5
Q ss_pred CCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 781953796899723888937766075686756352256899876368883289976154
Q gi|254780647|r 27 GGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI 86 (90)
Q Consensus 27 ~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~ 86 (90)
...+|.||+.|-.-- .|.||.|+.. .|..|||++-|.|.... ..+....|+|.|..
T Consensus 18 p~~~vlPGd~l~~~e--e~~~G~Gty~-~~g~I~Asv~G~v~~~~-~~~~~~vvsV~~~~ 73 (209)
T 2nn6_I 18 PVRYCIPGERLCNLE--EGSPGSGTYT-RHGYIFSSLAGCLMKSS-ENGALPVVSVVRET 73 (209)
T ss_dssp --CCCCTTCEEEETT--TCCCSSSCEE-ETTEEECCSCSCBCCCB-CTTSSBC-CBCCSC
T ss_pred CCEEECCCCCCCCCC--CCCCCCCEEE-ECCEEEEEEEEEEEECC-CCCEEEEEEECCCC
T ss_conf 870986998846666--7516799899-89999998777689817-88807789974677
No 9
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=87.20 E-value=0.51 Score=25.54 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=36.9
Q ss_pred CEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 1953796899723888937766075686756352256899876368883289976154
Q gi|254780647|r 29 QSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI 86 (90)
Q Consensus 29 q~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~ 86 (90)
+.|.||..|... .+.||.++.. .|..|+|.+.|.+.... +.|+|+|..
T Consensus 3 ~iVlPGd~i~~~---~~~~G~Gty~-~~~~i~atv~G~v~~~~------~~v~V~p~~ 50 (229)
T 2ba0_A 3 KIVLPGDLLSTN---PRAAGYGTYV-EGGKVYAKIIGLFDQTE------THVRVIPLK 50 (229)
T ss_dssp CEECTTCEEESC---TTSBCTTEEE-ETTEEEECSSEEEEECS------SCEEEEECS
T ss_pred EEEECCCCCCCC---CCCCCCCEEE-ECCEEEEEEEEEEEEEC------CEEEEEECC
T ss_conf 399796782659---8316895797-69999999868899959------979998688
No 10
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=74.44 E-value=5 Score=20.09 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=36.1
Q ss_pred ECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf 27819537968997238889377660756867563522568998763688832899761542
Q gi|254780647|r 26 SGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIE 87 (90)
Q Consensus 26 ~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~~ 87 (90)
-..+.|.||..|..--. ..-+|.++.. .|..|+|.+.|.+.+.. +.|+|+|...
T Consensus 14 ~~r~iVlPGd~l~~~~~-~~~~G~g~~~-~~~~i~at~~G~~~~~~------~~v~V~p~~~ 67 (251)
T 2je6_I 14 QPRSIVVPGELLAEGEF-QIPWSPYILK-INSKYYSTVVGLFDVKD------TQFEVIPLEG 67 (251)
T ss_dssp CSSCEECTTCEEEEECC-CCCCCTTEEE-ETTEEEECSSEEEEEET------TEEEEEESCC
T ss_pred CCCEEEECCCCCCCCCC-EECCCCEEEE-CCCEEEEEEEEEEEEEC------CEEEEEECCC
T ss_conf 79829959978545876-5468981991-49999998879999969------9699987888
No 11
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=40.07 E-value=4.9 Score=20.13 Aligned_cols=56 Identities=16% Similarity=0.043 Sum_probs=37.3
Q ss_pred EEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf 5427819537968997238889377660756867563522568998763688832899761542
Q gi|254780647|r 24 KKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIE 87 (90)
Q Consensus 24 K~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~~ 87 (90)
+-..++.|.||..|... .. ++|.++.. .|-.|+|.+-|.+... .+.+.++|.|.+.
T Consensus 5 r~~~~~iVlPGd~l~~~--~~-~~g~g~~~-~~g~i~As~~G~~~~~----~~~~~i~V~p~~~ 60 (235)
T 2z0s_A 5 RQLAGRIVVPGEPLPEE--VE-ASPPYVID-YKGVKRATVVGLLREK----GDGGGRAFVKLKE 60 (235)
T ss_dssp ---------------------------------------------------------------C
T ss_pred HCCCCCEECCCCCCCCC--CE-ECCCCEEE-CCCEEEEEEEEEEEEE----CCCCEEEECCCCC
T ss_conf 40488878898797748--67-76997898-8999999998878996----6897289724577
No 12
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=33.37 E-value=24 Score=16.35 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=27.1
Q ss_pred CCCCEEECCCCEEECCCCEEEECCCCEEEEEE
Q ss_conf 23888937766075686756352256899876
Q gi|254780647|r 40 QRGTRYHPGLNVGLGKDHTIYALVDGHVRFFK 71 (90)
Q Consensus 40 QRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~ 71 (90)
-|+-.+|.|.....-....++|..+|+|.+..
T Consensus 179 ~rgG~~H~GIDi~a~~GtpV~A~~dG~Vv~~g 210 (291)
T 1qwy_A 179 YHGGGAHYGVDYAMPENSPVYSLTDGTVVQAG 210 (291)
T ss_dssp CTTSSEECSEEEECCTTCEEECSSSEEEEEEE
T ss_pred CCCCCCEEEEEECCCCCCEEEECCCEEEEEEE
T ss_conf 89799658388588999969801287999988
No 13
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=22.01 E-value=38 Score=15.20 Aligned_cols=35 Identities=29% Similarity=0.543 Sum_probs=22.2
Q ss_pred EECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEE
Q ss_conf 42781953796899723888937766075686756352256899876
Q gi|254780647|r 25 KSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFK 71 (90)
Q Consensus 25 ~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~ 71 (90)
.-+||.|.+|.+|+ .|-|-. .-|.|-.+|+|+|..
T Consensus 66 VkdG~~Vk~g~~la-----~WDP~~-------~pIisE~~G~v~f~D 100 (190)
T 2auk_A 66 KGDGEQVAGGETVA-----NWDPHT-------MPVITEVSGFVRFTD 100 (190)
T ss_dssp SCTTCEECTTCEEE-----ECCSSE-------EEEECSSCEEEEEES
T ss_pred ECCCCEECCCCEEE-----EECCCC-------CEEEEEEEEEEEEEE
T ss_conf 86989973898999-----867988-------528888612899999
No 14
>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A
Probab=20.76 E-value=33 Score=15.54 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=18.3
Q ss_pred ECCCEECCCCEEEECCCCEEEC
Q ss_conf 2781953796899723888937
Q gi|254780647|r 26 SGGQSVIAGNIIIRQRGTRYHP 47 (90)
Q Consensus 26 ~~Gq~V~~G~IivRQRGtk~~P 47 (90)
||--.|.+|.|+|=+||++|..
T Consensus 195 fG~L~v~pGDyvVIPRG~~frv 216 (471)
T 1eyb_A 195 FGKMLVQPNEICVIQRGMRFSI 216 (471)
T ss_dssp TEEEEECTTEEEEECTTCCEEE
T ss_pred EEEEEECCCCEEEEECCCEEEE
T ss_conf 4579705885899706508987
Done!