Query gi|254780647|ref|YP_003065060.1| 50S ribosomal protein L27 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 90
No_of_seqs 109 out of 1152
Neff 4.0
Searched_HMMs 13730
Date Wed Jun 1 09:02:08 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780647.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2zjrt1 b.84.4.1 (T:2-85) Ribo 100.0 1.7E-42 0 252.7 7.0 83 2-85 1-83 (84)
2 d2gycu1 b.84.4.1 (U:1-84) Ribo 100.0 5.3E-44 0 261.0 -2.7 84 2-85 1-84 (84)
3 d1v8qa_ b.84.4.1 (A:) Ribosoma 100.0 5.1E-32 3.7E-36 195.0 6.0 66 20-86 1-66 (66)
4 d2ba0a2 b.84.4.2 (A:2-52) Exos 95.0 0.011 8.1E-07 33.4 3.8 48 29-86 2-49 (51)
5 d2je6i2 b.84.4.2 (I:7-65) Exos 89.8 0.17 1.3E-05 26.8 4.0 53 25-86 5-58 (59)
6 d2nn6h2 b.84.4.2 (H:25-72) Rib 86.2 0.23 1.7E-05 26.1 2.8 48 29-85 1-48 (48)
7 d2nn6i2 b.84.4.2 (I:6-60) Exos 80.0 0.26 1.9E-05 25.9 1.0 50 30-83 2-51 (55)
8 d1qwya_ b.84.3.2 (A:) Peptidog 35.2 14 0.001 16.3 2.9 33 40-72 160-192 (270)
9 d2nn6g2 b.84.4.2 (G:16-106) Ri 29.7 15 0.0011 16.2 2.3 45 26-71 7-74 (91)
10 d1eyba_ b.82.1.4 (A:) Homogent 21.6 18 0.0013 15.7 1.5 22 26-47 168-189 (439)
11 d1ci3m2 b.84.2.2 (M:170-231) C 20.3 28 0.0021 14.6 3.5 27 59-86 2-30 (62)
No 1
>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00 E-value=1.7e-42 Score=252.74 Aligned_cols=83 Identities=53% Similarity=0.908 Sum_probs=80.3
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf 60145676067898874253245427819537968997238889377660756867563522568998763688832899
Q gi|254780647|r 2 AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVS 81 (90)
Q Consensus 2 A~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~ 81 (90)
||||++|||+|+|||+|||||||+|+||+|.||+||||||||+||||+||+||+||||||+++|+|+|++. .++|++||
T Consensus 1 A~KK~~GSt~NgrdS~~krlGvK~~~Gq~V~~G~IivRQRGtk~hpG~nVg~GkD~TLfA~~~G~V~F~k~-~~~rk~V~ 79 (84)
T d2zjrt1 1 AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINK-GKGARFIS 79 (84)
T ss_dssp CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEE-TTTEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCEEEEECCCEECCCCCCCCCCCCCEEEEECEEEEEEEC-CCCCEEEE
T ss_conf 97456577788988987416578779978707858999447617287872336888688850339999895-89998989
Q ss_pred EECC
Q ss_conf 7615
Q gi|254780647|r 82 VIPK 85 (90)
Q Consensus 82 V~P~ 85 (90)
|+|+
T Consensus 80 V~p~ 83 (84)
T d2zjrt1 80 IEAA 83 (84)
T ss_dssp ECCC
T ss_pred EEEC
T ss_conf 9968
No 2
>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.3e-44 Score=261.00 Aligned_cols=84 Identities=57% Similarity=0.974 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf 60145676067898874253245427819537968997238889377660756867563522568998763688832899
Q gi|254780647|r 2 AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVS 81 (90)
Q Consensus 2 A~KK~gGStkNgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~ 81 (90)
||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||+||+||||||+++|+|+|+++..++|++||
T Consensus 1 A~KK~~GSs~NgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~hPG~nVg~GkD~TLfAl~~G~V~F~~~~~~~r~~V~ 80 (84)
T d2gycu1 1 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFIS 80 (84)
T ss_dssp CCCCSCCSCCCCCCCCCBCCCCSSSCCCSSCCSBSSCCCCCCSSCCCCCSSSCCCCCCCCCSCCCCSSSSSSCSCCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCEEEEECCCEECCCCCEEECCCCEEEEECCEEEEEEECCCCCCEEEE
T ss_conf 97456566788988987515467769979707828999436607287874056788098831679998781789999999
Q ss_pred EECC
Q ss_conf 7615
Q gi|254780647|r 82 VIPK 85 (90)
Q Consensus 82 V~P~ 85 (90)
|+|+
T Consensus 81 V~~e 84 (84)
T d2gycu1 81 IEAE 84 (84)
T ss_dssp SSCC
T ss_pred EEEC
T ss_conf 9869
No 3
>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}
Probab=99.97 E-value=5.1e-32 Score=195.00 Aligned_cols=66 Identities=55% Similarity=0.915 Sum_probs=62.6
Q ss_pred EEEEEEECCCEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 5324542781953796899723888937766075686756352256899876368883289976154
Q gi|254780647|r 20 RLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI 86 (90)
Q Consensus 20 rLGvK~~~Gq~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~ 86 (90)
|||||+|+||+|.||+||||||||+||||+||+|||||||||+++|+|+|++. .++|++|||+|.+
T Consensus 1 RLGvK~~~Gq~V~~G~IivRQRGtk~~pG~nVg~GkD~TLfAl~~G~V~F~~~-~~~~~~VsV~P~a 66 (66)
T d1v8qa_ 1 RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR-GRLGRYVHVRPLA 66 (66)
T ss_dssp CCEECSCTTCEECTTCEEEECSSCSSEECTTEEECTTCCEEESSSEEEEEEEC-GGGCEEEEEEECC
T ss_pred CCCCEEECCEEEECCEEEEEECCCEEECCCCEEECCCCCEEEEEEEEEEEEEE-CCCCEEEEEEECC
T ss_conf 97428839989817809999516708087875065788199961269999891-8998499999788
No 4
>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=94.96 E-value=0.011 Score=33.39 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=39.5
Q ss_pred CEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 1953796899723888937766075686756352256899876368883289976154
Q gi|254780647|r 29 QSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI 86 (90)
Q Consensus 29 q~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~ 86 (90)
+.|.||.+|.. + .|.||.++.. .|..|+|.+-|.|... + +.|+|+|..
T Consensus 2 ~iV~PGe~i~~--~-~~~~G~Gty~-~~~~i~ss~~G~v~~~-----n-~~i~V~PL~ 49 (51)
T d2ba0a2 2 KIVLPGDLLST--N-PRAAGYGTYV-EGGKVYAKIIGLFDQT-----E-THVRVIPLK 49 (51)
T ss_dssp CEECTTCEEES--C-TTSBCTTEEE-ETTEEEECSSEEEEEC-----S-SCEEEEECS
T ss_pred CEECCCCEEEC--C-CEECCCCCEE-ECCEEEEEEEEEEEEE-----C-CEEEEEECC
T ss_conf 79859869201--9-8147987498-7999999998999997-----9-999999686
No 5
>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=89.83 E-value=0.17 Score=26.82 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=37.5
Q ss_pred EECCCEECCCCEEEECCCCEEEC-CCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf 42781953796899723888937-766075686756352256899876368883289976154
Q gi|254780647|r 25 KSGGQSVIAGNIIIRQRGTRYHP-GLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKI 86 (90)
Q Consensus 25 ~~~Gq~V~~G~IivRQRGtk~~P-G~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~~ 86 (90)
.-+-+.|.||.+|... ..|.| |..+. =.+..|+|.+.|.|.... +.|+|+|..
T Consensus 5 v~~r~iV~PGdvi~~~--~~~~~~g~~ty-~~~~ki~asv~G~v~~~n------kli~ViPL~ 58 (59)
T d2je6i2 5 LQPRSIVVPGELLAEG--EFQIPWSPYIL-KINSKYYSTVVGLFDVKD------TQFEVIPLE 58 (59)
T ss_dssp CCSSCEECTTCEEEEE--CCCCCCCTTEE-EETTEEEECSSEEEEEET------TEEEEEESC
T ss_pred ECCCEEECCCCEEEEC--CCCCCCCCEEE-ECCCEEEEEEEEEEEEEC------CEEEEEECC
T ss_conf 8487698897294628--74046898899-439999999988899989------999999788
No 6
>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=86.21 E-value=0.23 Score=26.11 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=37.7
Q ss_pred CEECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEECC
Q ss_conf 195379689972388893776607568675635225689987636888328997615
Q gi|254780647|r 29 QSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPK 85 (90)
Q Consensus 29 q~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~P~ 85 (90)
+.|.||..|-.+-+ |-.|-+..+- |..|+|.+.|.|.-.. +.|+|.|.
T Consensus 1 ~iv~PGe~It~~~~--~mrGHGTy~~-~~~i~aSv~G~vervN------KLvsV~pL 48 (48)
T d2nn6h2 1 HLVVPGDTITTDTG--FMRGHGTYMG-EEKLIASVAGSVERVN------KLICVKAL 48 (48)
T ss_dssp CBCCTTCBCCCCTT--CCBCTTEEEC-SSSEEECSSEEEEEET------TEEEEEES
T ss_pred CEECCCCEEECCCC--EECCCCCEEC-CCEEEEEEEEEEEEEC------CEEEEECC
T ss_conf 98369858405888--6726644963-9979999862677854------37999759
No 7
>d2nn6i2 b.84.4.2 (I:6-60) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.97 E-value=0.26 Score=25.85 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=36.4
Q ss_pred EECCCCEEEECCCCEEECCCCEEECCCCEEEECCCCEEEEEEECCCCCCEEEEE
Q ss_conf 953796899723888937766075686756352256899876368883289976
Q gi|254780647|r 30 SVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVI 83 (90)
Q Consensus 30 ~V~~G~IivRQRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~~~~~r~~V~V~ 83 (90)
++.||+.|-.- ..|.||.|+-. .+..|||...|.|...++ .+....|+|+
T Consensus 2 ~~lPGe~L~~~--eey~~G~gTy~-~~g~I~as~~G~v~id~~-~~~isVisV~ 51 (55)
T d2nn6i2 2 YCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSE-NGALPVVSVV 51 (55)
T ss_dssp CCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBC-TTSSBC-CBC
T ss_pred CCCCCCEEEEH--HEECCCCCEEE-CCCEEEEEEEEEEEEECC-CCEEEEEEEE
T ss_conf 12687697433--30517898097-399999974688999257-8886589998
No 8
>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus aureus [TaxId: 1280]}
Probab=35.16 E-value=14 Score=16.31 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=28.0
Q ss_pred CCCCEEECCCCEEECCCCEEEECCCCEEEEEEE
Q ss_conf 238889377660756867563522568998763
Q gi|254780647|r 40 QRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKK 72 (90)
Q Consensus 40 QRGtk~~PG~nVg~GkD~TLfA~~~G~V~f~~~ 72 (90)
.|+-.+|.|.....-....++|..+|+|.|...
T Consensus 160 ~r~g~~H~GIDi~a~~GtpV~A~~dG~V~~ag~ 192 (270)
T d1qwya_ 160 YHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGW 192 (270)
T ss_dssp CTTSSEECSEEEECCTTCEEECSSSEEEEEEEE
T ss_pred CCCCCCEEEEEECCCCCCEEEEEECEEEEEEEE
T ss_conf 897996486995889999699410879999897
No 9
>d2nn6g2 b.84.4.2 (G:16-106) Ribosomal RNA-processing protein 40, RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.71 E-value=15 Score=16.18 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=28.7
Q ss_pred ECCCEECCCCEEEE-----CCC------------------CEEECCCCEEECCCCEEEECCCCEEEEEE
Q ss_conf 27819537968997-----238------------------88937766075686756352256899876
Q gi|254780647|r 26 SGGQSVIAGNIIIR-----QRG------------------TRYHPGLNVGLGKDHTIYALVDGHVRFFK 71 (90)
Q Consensus 26 ~~Gq~V~~G~IivR-----QRG------------------tk~~PG~nVg~GkD~TLfA~~~G~V~f~~ 71 (90)
.=+|.|.||.+|+- +-| .+..-|.....- +.+|+|...|+.++.+
T Consensus 7 ~~~qvVlPGD~l~lp~~~~~~g~~~~~~~~l~L~~~~~~~~~v~lGPGLRq~-~d~v~atKaG~LR~k~ 74 (91)
T d2nn6g2 7 VLGQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRRC-GDRLLVTKCGRLRHKE 74 (91)
T ss_dssp GGSSBCCSSEEECCSCSCCEECSSEEECC------------------------CCCEEECSCCEEEEEC
T ss_pred HCCCEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEE-CCEEEEEECCEEEECC
T ss_conf 1387870786887033123446576755321036464777218868761551-8879996132533127
No 10
>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.57 E-value=18 Score=15.69 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=18.4
Q ss_pred ECCCEECCCCEEEECCCCEEEC
Q ss_conf 2781953796899723888937
Q gi|254780647|r 26 SGGQSVIAGNIIIRQRGTRYHP 47 (90)
Q Consensus 26 ~~Gq~V~~G~IivRQRGtk~~P 47 (90)
||--.|.+|.|+|=+||++|..
T Consensus 168 fG~L~v~pGDyvVIPRG~~frv 189 (439)
T d1eyba_ 168 FGKMLVQPNEICVIQRGMRFSI 189 (439)
T ss_dssp TEEEEECTTEEEEECTTCCEEE
T ss_pred EEEEEECCCCEEEECCCEEEEE
T ss_conf 3579852783899617528997
No 11
>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}
Probab=20.34 E-value=28 Score=14.60 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=18.2
Q ss_pred EE-ECCCCEEE-EEEECCCCCCEEEEECCC
Q ss_conf 63-52256899-876368883289976154
Q gi|254780647|r 59 IY-ALVDGHVR-FFKKFSKGRAYVSVIPKI 86 (90)
Q Consensus 59 Lf-A~~~G~V~-f~~~~~~~r~~V~V~P~~ 86 (90)
+| |-++|.|. |.+ ..++.+.|.|.++.
T Consensus 2 v~~A~~~G~V~~i~~-~~~g~~~I~I~~~~ 30 (62)
T d1ci3m2 2 VYNASAAGVITAIAK-ADDGSAEVKIRTED 30 (62)
T ss_dssp CCBCSSCEEEEEEEE-CTTSCEEEEEECTT
T ss_pred EEECCCCEEEEEEEE-CCCCCEEEEEECCC
T ss_conf 496710879989586-26998899999999
Done!