RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780647|ref|YP_003065060.1| 50S ribosomal protein L27 [Candidatus Liberibacter asiaticus str. psy62] (90 letters) >gnl|CDD|144560 pfam01016, Ribosomal_L27, Ribosomal L27 protein. Length = 80 Score = 133 bits (337), Expect = 1e-32 Identities = 59/81 (72%), Positives = 70/81 (86%), Gaps = 1/81 (1%) Query: 2 AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYA 61 AHKK GGST+NGRDS G+RLG+KK GGQ V AGNII+RQRGT++HPG NVG+GKDHT++A Sbjct: 1 AHKKGGGSTKNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFA 60 Query: 62 LVDGHVRFFKKFSKGRAYVSV 82 LVDG+V+F KK K R YVSV Sbjct: 61 LVDGYVKFEKK-PKKRKYVSV 80 >gnl|CDD|30560 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]. Length = 87 Score = 121 bits (305), Expect = 4e-29 Identities = 59/87 (67%), Positives = 72/87 (82%), Gaps = 1/87 (1%) Query: 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIY 60 MAHKK GGST+NGRDS +RLG+KK GGQ V AG+II+RQRGT++HPG+NVG GKDHT++ Sbjct: 1 MAHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLF 60 Query: 61 ALVDGHVRFFKKFSKGRAYVSVIPKIE 87 ALVDG V+F K K R YVSV+P+ E Sbjct: 61 ALVDGVVKFETK-GKNRKYVSVVPEAE 86 >gnl|CDD|39800 KOG4600, KOG4600, KOG4600, Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]. Length = 144 Score = 117 bits (294), Expect = 8e-28 Identities = 55/84 (65%), Positives = 67/84 (79%), Gaps = 1/84 (1%) Query: 2 AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYA 61 A KK GST+NGRDSAG+RLG+KK GQSVI GNII+RQRGT++HPG NVG+GKDHTI+A Sbjct: 29 ATKKGAGSTKNGRDSAGRRLGVKKYEGQSVIPGNIIVRQRGTKFHPGDNVGIGKDHTIFA 88 Query: 62 LVDGHVRFFK-KFSKGRAYVSVIP 84 L +G VRF K K + R ++ V P Sbjct: 89 LEEGRVRFEKSKITPPRKWIGVDP 112 >gnl|CDD|177044 CHL00121, rpl27, ribosomal protein L27; Reviewed. Length = 86 Score = 112 bits (281), Expect = 3e-26 Identities = 52/84 (61%), Positives = 67/84 (79%), Gaps = 1/84 (1%) Query: 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIY 60 MAHKK GST+NGRDS +RLG+K+ GG+ V AGNI+IRQRGT++ PGLNVG GKD T+Y Sbjct: 1 MAHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLY 60 Query: 61 ALVDGHVRFFKKFSKGRAYVSVIP 84 AL+DG V+ FKK +K + ++VI Sbjct: 61 ALIDGFVK-FKKKNKKQKSINVIN 83 >gnl|CDD|36641 KOG1428, KOG1428, KOG1428, Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]. Length = 3738 Score = 30.1 bits (67), Expect = 0.13 Identities = 12/31 (38%), Positives = 15/31 (48%) Query: 47 PGLNVGLGKDHTIYALVDGHVRFFKKFSKGR 77 + V G +HTI DG V F F KG+ Sbjct: 820 VIVQVAAGSNHTILRANDGSVFTFGAFGKGQ 850 >gnl|CDD|147114 pfam04794, YdjC, YdjC-like protein. Family of YdjC-like proteins. This region is possibly involved in the the cleavage of cellobiose-phosphate. Length = 261 Score = 27.2 bits (61), Expect = 1.0 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 10/46 (21%) Query: 46 HPGLNVGL------GKDHT----IYALVDGHVRFFKKFSKGRAYVS 81 +P L VGL GK + +LVD + F + R + Sbjct: 51 NPDLGVGLHLTLTAGKPLLPPTEVPSLVDENGYFLRLSVLLRRALL 96 >gnl|CDD|37479 KOG2268, KOG2268, KOG2268, Serine/threonine protein kinase [Signal transduction mechanisms, General function prediction only]. Length = 465 Score = 25.7 bits (56), Expect = 2.5 Identities = 9/28 (32%), Positives = 15/28 (53%) Query: 38 IRQRGTRYHPGLNVGLGKDHTIYALVDG 65 + RG+ G +G+GK+ IY + D Sbjct: 87 LSNRGSVESVGNQIGVGKESDIYVVADE 114 >gnl|CDD|143839 pfam00054, Laminin_G_1, Laminin G domain. Length = 131 Score = 25.7 bits (57), Expect = 3.0 Identities = 9/35 (25%), Positives = 12/35 (34%) Query: 54 GKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIED 88 +D L DG + G A V K+ D Sbjct: 18 ERDFLALELRDGRLEVSYDLGSGPAVVRSGDKLND 52 >gnl|CDD|38526 KOG3316, KOG3316, KOG3316, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]. Length = 163 Score = 25.2 bits (55), Expect = 4.0 Identities = 9/29 (31%), Positives = 11/29 (37%) Query: 57 HTIYALVDGHVRFFKKFSKGRAYVSVIPK 85 Y L D R+ S G Y+ PK Sbjct: 94 RGTYVLQDNKFRWLTSMSPGTQYLEEAPK 122 >gnl|CDD|39541 KOG4340, KOG4340, KOG4340, Uncharacterized conserved protein [Function unknown]. Length = 459 Score = 25.0 bits (54), Expect = 4.2 Identities = 8/19 (42%), Positives = 12/19 (63%) Query: 38 IRQRGTRYHPGLNVGLGKD 56 I +RG R HP L +G+ + Sbjct: 204 IIERGIRQHPELGIGMTTE 222 >gnl|CDD|113519 pfam04752, ChaC, ChaC-like protein. The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins. Length = 178 Score = 24.6 bits (54), Expect = 5.2 Identities = 6/20 (30%), Positives = 8/20 (40%) Query: 38 IRQRGTRYHPGLNVGLGKDH 57 RGT PG + L + Sbjct: 37 TDHRGTPEQPGRVLTLEEGE 56 >gnl|CDD|35386 KOG0164, KOG0164, KOG0164, Myosin class I heavy chain [Cytoskeleton]. Length = 1001 Score = 24.5 bits (53), Expect = 6.9 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 6/62 (9%) Query: 22 GLKKSGGQSV------IAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSK 75 G K + GQS + + L G + L HV+ +F+K Sbjct: 809 GKKANWGQSRAWIGDYLGSQEENPGYSATFKNRLQQLKGSETFGPVLFSSHVKKVNRFNK 868 Query: 76 GR 77 R Sbjct: 869 PR 870 >gnl|CDD|30826 COG0478, COG0478, RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]. Length = 304 Score = 24.4 bits (53), Expect = 7.0 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 12/55 (21%) Query: 39 RQRGTRYHPGLNVGLGKDHTIYALVDGH-----VRF-------FKKFSKGRAYVS 81 +RG G +G+GK+ +Y +D V+F F+K + R Y++ Sbjct: 87 VKRGIVEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLA 141 >gnl|CDD|29010 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.. Length = 151 Score = 24.3 bits (52), Expect = 7.2 Identities = 9/39 (23%), Positives = 12/39 (30%) Query: 52 GLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIPKIEDTQ 90 G D L DG + G +S + D Q Sbjct: 43 QNGGDFLALELEDGRLVLRYDLGSGSLVLSSKTPLNDGQ 81 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.318 0.137 0.397 Gapped Lambda K H 0.267 0.0746 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,035,907 Number of extensions: 46809 Number of successful extensions: 104 Number of sequences better than 10.0: 1 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 20 Length of query: 90 Length of database: 6,263,737 Length adjustment: 59 Effective length of query: 31 Effective length of database: 4,988,806 Effective search space: 154652986 Effective search space used: 154652986 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 51 (23.4 bits)