RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780647|ref|YP_003065060.1| 50S ribosomal protein L27
[Candidatus Liberibacter asiaticus str. psy62]
         (90 letters)



>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli
          [TaxId: 562]}
          Length = 84

 Score =  117 bits (296), Expect = 2e-28
 Identities = 48/83 (57%), Positives = 66/83 (79%)

Query: 2  AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYA 61
          AHKK+GGST+NGRDS  +RLG+K+ GG+SV+AG+II+RQRGT++H G NVG G+DHT++A
Sbjct: 1  AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 60

Query: 62 LVDGHVRFFKKFSKGRAYVSVIP 84
            DG V+F  K  K R ++S+  
Sbjct: 61 KADGKVKFEVKGPKNRKFISIEA 83


>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 84

 Score =  115 bits (291), Expect = 8e-28
 Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 2  AHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYA 61
          AHKK  GS++NGRDS  + LG+KK GG+ V AGNI++RQRGT++  G  VG+G+DHT++A
Sbjct: 1  AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 60

Query: 62 LVDGHVRFFKKFSKGRAYVSVIP 84
          L DG V F  K  KG  ++S+  
Sbjct: 61 LSDGKVVFINK-GKGARFISIEA 82


>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus
          [TaxId: 274]}
          Length = 66

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 1/65 (1%)

Query: 20 RLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAY 79
          RLG+K+  GQ V AGNI++RQRGTR+ PG NVG+G+D T++ALVDG V F  +  +   Y
Sbjct: 1  RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR-GRLGRY 59

Query: 80 VSVIP 84
          V V P
Sbjct: 60 VHVRP 64


>d1qwya_ b.84.3.2 (A:) Peptidoglycan hydrolase LytM {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 270

 Score = 25.8 bits (56), Expect = 1.0
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 39  RQRGTRYHPGLNVGLGKDHTIYALVDGHVRFFKKFSKGRAYVSVIP 84
           +  G   H G++  + ++  +Y+L DG V      + G      I 
Sbjct: 159 QYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIK 204


>d2a8ea1 d.296.1.1 (A:2-211) Hypothetical protein YktB {Bacillus
          subtilis [TaxId: 1423]}
          Length = 210

 Score = 23.2 bits (50), Expect = 6.1
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 41 RGTRYHPGLNVGLGKDH 57
          RG +  P   +GL + H
Sbjct: 79 RGYKKLPHFQIGLWESH 95


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 327,585
Number of extensions: 12918
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 6
Length of query: 90
Length of database: 2,407,596
Length adjustment: 54
Effective length of query: 36
Effective length of database: 1,666,176
Effective search space: 59982336
Effective search space used: 59982336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)