BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780647|ref|YP_003065060.1| 50S ribosomal protein L27
[Candidatus Liberibacter asiaticus str. psy62]
(90 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780647|ref|YP_003065060.1| 50S ribosomal protein L27 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 90
Score = 182 bits (461), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIY 60
MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIY
Sbjct: 1 MAHKKSGGSTQNGRDSAGQRLGLKKSGGQSVIAGNIIIRQRGTRYHPGLNVGLGKDHTIY 60
Query: 61 ALVDGHVRFFKKFSKGRAYVSVIPKIEDTQ 90
ALVDGHVRFFKKFSKGRAYVSVIPKIEDTQ
Sbjct: 61 ALVDGHVRFFKKFSKGRAYVSVIPKIEDTQ 90
>gi|254780376|ref|YP_003064789.1| flagellar basal body P-ring protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 369
Score = 22.3 bits (46), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 53 LGKDHTIYALVDGHVRFFKKFSKGRA 78
LG D IYA+ G V F KG++
Sbjct: 130 LGADGNIYAVAQGSVVVSGLFVKGQS 155
>gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC
[Candidatus Liberibacter asiaticus str. psy62]
Length = 581
Score = 22.3 bits (46), Expect = 1.7, Method: Composition-based stats.
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 62 LVDGHVRFFKKFSKGRAYVSVIP 84
L DGH R+ KFS ++++P
Sbjct: 278 LSDGHARYQAKFSANE--ITILP 298
>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 502
Score = 21.2 bits (43), Expect = 3.3, Method: Composition-based stats.
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 50 NVGLGKDHTIYALVDGHVR 68
+VGLGK H + A+ + ++
Sbjct: 204 SVGLGKTHLLQAIANASIK 222
>gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 492
Score = 20.8 bits (42), Expect = 4.6, Method: Composition-based stats.
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 62 LVDGHVRFFKKFSKGRAYVSVIPK 85
++D H+ ++G ++S +PK
Sbjct: 203 VIDDHLMKITHVARGEEWISSVPK 226
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 20.4 bits (41), Expect = 5.9, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 12 NGRDSAGQRLGLKKSGGQ 29
NG D+ GLK SGG+
Sbjct: 481 NGYDTVVGERGLKLSGGE 498
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.318 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,143
Number of Sequences: 1233
Number of extensions: 2395
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 90
length of database: 328,796
effective HSP length: 58
effective length of query: 32
effective length of database: 257,282
effective search space: 8233024
effective search space used: 8233024
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 31 (16.5 bits)