HHsearch alignment for GI: 254780648 and conserved domain: COG3523
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].
Probab=96.84 E-value=0.0068 Score=37.38 Aligned_cols=151 Identities=17% Similarity=0.132 Sum_probs=69.7
Q ss_pred EEECCCCCCCEEEEEECCCCCHHH--HHHHCCCEECCEEEE-ECCEEEEEECCCCC-CCCC---CCCCCCHHHHHHHHHH
Q ss_conf 442167775303541014540121--211000000102663-29868998226421-2473---1167751234433333
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIA--DYPFTTLYPNLGIVK-EGYKEFILADIPGI-IKNA---HQGAGIGDRFLKHTER 236 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa--~ypFTT~~P~lGvv~-~~~~~~~i~D~PGl-IegA---~~~~glG~~FLrhIer 236 (335)
T Consensus 130 viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~-~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk 208 (1188)
T COG3523 130 VIGPPGSGKTTALLNSGLQFPLAEQMGALGLA-GPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKK 208 (1188)
T ss_pred EECCCCCCCCHHHHCCCCCCCCHHHHCCCCCC-CCCCCCCCCCCCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 85488898400875155366615553312226-88873357542553489858752443667502348889998889997
Q ss_pred H------HHHHHHCC---CCCCCHHHH---HHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCH-HHHHHHH-HHHHHHCC
Q ss_conf 5------78875202---222110134---666789987776675-05988999974658998-8999999-99998629
Q gi|254780648|r 237 T------HVLLHIVS---ALEENVQAA---YQCILDELSAYNSEL-RKKIEIVGLSQIDTVDS-DTLARKK-NELATQCG 301 (335)
Q Consensus 237 ~------~vLl~VVD---~s~~d~~~~---~~~I~~EL~~y~~~L-~~Kp~IIVlNKiDl~~~-e~~~~~~-~~l~~~~~ 301 (335)
T Consensus 209 ~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~~~r~qvw 288 (1188)
T COG3523 209 YRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNKEEREQVW 288 (1188)
T ss_pred HCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCHHHHHHHC
T ss_conf 35578886379997899973899999999999999999999984156776389986210021579987333798874001
Q ss_pred CCEEEEECCCCCCH
Q ss_conf 94899988878899
Q gi|254780648|r 302 QVPFEFSSITGHGI 315 (335)
Q Consensus 302 ~~vi~ISA~tg~GI 315 (335)
T Consensus 289 G~tf~~~~~~~~~~ 302 (1188)
T COG3523 289 GVTFPLDARRNANL 302 (1188)
T ss_pred EECCCCCCCCCCCH
T ss_conf 00125666666455