HHsearch alignment for GI: 254780648 and conserved domain: PRK10512
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional.
Probab=99.45 E-value=3.6e-13 Score=99.70 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=97.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHH-HH--HHHCCCEECCEEEE---ECCEEEEEECCCCCCCCCCCCCCCHHHHHHHH-
Q ss_conf 1244216777530354101454012-12--11000000102663---29868998226421247311677512344333-
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKI-AD--YPFTTLYPNLGIVK---EGYKEFILADIPGIIKNAHQGAGIGDRFLKHT- 234 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kI-a~--ypFTT~~P~lGvv~---~~~~~~~i~D~PGlIegA~~~~glG~~FLrhI- 234 (335)
T Consensus 3 igTAGHVDHGKTsLvkALTG~dtDRL~EEk~RGiTId--LGFA~~~l~~g~~~g~VDVPG-----HE------rFIknMl 69 (615)
T PRK10512 3 IATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTID--LGYAYWPQPDGRVLGFIDVPG-----HE------KFLSNML 69 (615)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCEEE--ECEEEEECCCCCEEEEEECCC-----HH------HHHHHHH
T ss_conf 9963654778999999986888656977897187277--130755579997899987998-----38------9999997
Q ss_pred ---HHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC------CC
Q ss_conf ---335788752022221---101346667899877766750598899997465899889999999999862------99
Q gi|254780648|r 235 ---ERTHVLLHIVSALEE---NVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC------GQ 302 (335)
Q Consensus 235 ---er~~vLl~VVD~s~~---d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~------~~ 302 (335)
T Consensus 70 AG~~gid~vlLVVAAdeGvMPQT~EHl~Il~--------lLgi~~giV~lTK~Dlvd~e~l~~v~~ei~~~l~~t~l~~~ 141 (615)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQ--------LTGNPMLTVALTKADRVDEARIDEVRRQVLEVLREYGFAEA 141 (615)
T ss_pred HHHHHCCEEEEEEECCCCCCCCHHHHHHHHH--------HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 4464378899999889987723799999999--------81998289999776568979999999999999844787679
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 48999888788999999999999985452
Q gi|254780648|r 303 VPFEFSSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 303 ~vi~ISA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
T Consensus 142 pi~~vSa~tg~Gi~~L~~~L~~l~~~~~~ 170 (615)
T PRK10512 142 KLFVTAATEGRGIDALREHLLQLPEREHA 170 (615)
T ss_pred CEEECCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 75201456667999999999862556667