HHsearch alignment for GI: 254780648 and conserved domain: PRK11247
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional.
Probab=95.58 E-value=0.017 Score=34.88 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=60.5
Q ss_pred ECEEEEECCCCCCCEEEEEECCC-CCHH-----HHHHHCCCEECCEEEEECCEEEEEECCCCCCC--CCCCCCCCHHHHH
Q ss_conf 01124421677753035410145-4012-----12110000001026632986899822642124--7311677512344
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRA-KPKI-----ADYPFTTLYPNLGIVKEGYKEFILADIPGIIK--NAHQGAGIGDRFL 231 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~a-k~kI-----a~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIe--gA~~~~glG~~FL 231 (335)
T Consensus 39 Eiv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~~~~~i~~~~~~i~--------~vfQ~-~~l~~~~tV~eni~~gl~~- 108 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGLETPTAGDLLAGTAPLAEAQEDTR--------LMFQD-ARLLPWKKVIDNVGLGLKG- 108 (257)
T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHHHCEE--------EEECC-CCCCCCCCHHHHHHHHCCC-
T ss_conf 8999998998889999999965898888708989875544311007--------99325-6447677899998632141-
Q ss_pred HHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 33333578875202222---1101346667899877766750598899997----4658998899999999998629948
Q gi|254780648|r 232 KHTERTHVLLHIVSALE---ENVQAAYQCILDELSAYNSELRKKIEIVGLS----QIDTVDSDTLARKKNELATQCGQVP 304 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~---~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlN----KiDl~~~e~~~~~~~~l~~~~~~~v 304 (335)
T Consensus 109 ~~~~~~~e~l~~vgL~~~~~~~p-~~LSGGqkQRvaiAraL~~~P~lLlLDEPtsgLD~~~~~~i~~ll~~L~~e~g~TI 187 (257)
T PRK11247 109 QWRDAALQALAAVGLADRANEWP-AALSGGQKQRVALARALIHRPRLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTV 187 (257)
T ss_pred CHHHHHHHHHHHCCCCHHHHCCH-HHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 06999999999859913553694-44899999999999998459999998098765799999999999999999609899
Q ss_pred EEEE
Q ss_conf 9998
Q gi|254780648|r 305 FEFS 308 (335)
Q Consensus 305 i~IS 308 (335)
T Consensus 188 i~vT 191 (257)
T PRK11247 188 LLVT 191 (257)
T ss_pred EEEC
T ss_conf 9988