HHsearch alignment for GI: 254780648 and conserved domain: TIGR00487

>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=98.16  E-value=1.1e-05  Score=54.25  Aligned_cols=145  Identities=21%  Similarity=0.369  Sum_probs=93.0

Q ss_pred             ECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEE--E-CCE-EEEEECCCCCCCCCCCCCCCHHHH--H--
Q ss_conf             0112442167775303541014540121211000000102663--2-986-899822642124731167751234--4--
Q gi|254780648|r  160 ADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVK--E-GYK-EFILADIPGIIKNAHQGAGIGDRF--L--  231 (335)
Q Consensus       160 aDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~--~-~~~-~~~i~D~PGlIegA~~~~glG~~F--L--  231 (335)
T Consensus        91 p~~~~~gh~dhg~~~ll~~~~~~~--~~~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh-----~------~f~~~~~  157 (594)
T TIGR00487        91 PVVTIMGHVDHGKTSLLDSIRKTK--VAAGEAGGITQHIGAYHVEKEDGKKWITFLDTPGH-----E------AFTLMRA  157 (594)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHCC--CCCCCCCCCHHHCCEEEEEECCCCEEEEEECCCCH-----H------HHHHHHH
T ss_conf             636885123554034565554100--00111365201013045664288437998407753-----6------7787763


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHHHH---HHCC--CCE
Q ss_conf             3333357887520222211013466678998777667505988999974658998--89999999999---8629--948
Q gi|254780648|r  232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS--DTLARKKNELA---TQCG--QVP  304 (335)
Q Consensus       232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~~~~~~~l~---~~~~--~~v  304 (335)
T Consensus       158 ~g~~~~d~~~~~~~~~dg~~~~~~~~~~h------~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~  231 (594)
T TIGR00487       158 RGAKVTDIVVLVVAADDGVKPQTIEAISH------AKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIF  231 (594)
T ss_pred             CCCCEEEEEEEEEECCCCCCHHHHHHHHH------HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEE
T ss_conf             37610015799984155642356887653------333077369986124676678778999987517750112783468


Q ss_pred             EEEECCCCCCHHHHHHHHH
Q ss_conf             9998887889999999999
Q gi|254780648|r  305 FEFSSITGHGIPQILECLH  323 (335)
Q Consensus       305 i~ISA~tg~GI~eL~~~I~  323 (335)
T Consensus       232 ~~~~~~~g~g~~~l~~~~l  250 (594)
T TIGR00487       232 VPVSALTGDGIDELLDAIL  250 (594)
T ss_pred             EEEECCCCCCHHHHHHHHH
T ss_conf             8620013676578888888