HHsearch alignment for GI: 254780648 and conserved domain: TIGR02729
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=100.00 E-value=0 Score=983.91 Aligned_cols=283 Identities=54% Similarity=0.978 Sum_probs=278.3
Q ss_pred EEEEEEEEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCCCHHHHCCCCEECCCCCCCCCCCCCCC
Q ss_conf 1149999998369998414525667779999988888986529999668-987215541465420567866542213354
Q gi|254780648|r 3 FLDEAKVYIRSGDGGAGGISFRREKFIEFGGPDGGSGGRGGDVWIQATS-NLNTLIDFRYQQHFKAQHGEKGMKRNRSGA 81 (335)
Q Consensus 3 f~D~~~i~~~~G~GG~G~~sf~r~k~~~~g~p~gg~GG~Gg~v~~~~~~-~~~~l~~~~~~~~~~A~~G~~G~~~~~~G~ 81 (335)
T Consensus 1 F~D~~~I~v~aG~GG~G~vSFRREK~vP~GGPdGGdGG~GG~Vif~a~~l~~~tL~~~~~~~~~~A~~G~~G~~~~~~G~ 80 (296)
T TIGR02729 1 FIDEVKIEVKAGNGGNGCVSFRREKFVPKGGPDGGDGGRGGSVIFVADSLNLNTLLDFRYKKHLKAENGENGMGKNRHGK 80 (296)
T ss_pred CCEEEEEEEEECCCCCCCEEEEHEECCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCEEEEECCCCCCCCCCCCCC
T ss_conf 90389999972788885401100001568687888887053489980335731033421402898036898885457788
Q ss_pred CCCCEEEECCCCCEEEECCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEC
Q ss_conf 44611998283323573258826645612684555226777763443326766767610136775302689999976301
Q gi|254780648|r 82 KGEDVVLTVPVGTQVFEEDGISLICDLDQEGQRIILAPGGNGGFGNAHFKSSTNQAPYYANPGILGQEKIIWLKLKLIAD 161 (335)
Q Consensus 82 ~g~d~~i~vP~GT~v~~~~~~~~~~dl~~~~~~~~~~~GG~GG~GN~~f~s~~n~~P~~~~~G~~G~~~~~~lelk~iaD 161 (335)
T Consensus 81 ~G~Dl~i~VP~GT~v~d~~~g~~i~Dl~~~g~~~~~akGG~GG~GN~~Fkts~n~AP~~ae~G~~GE~r~~~LELKllAD 160 (296)
T TIGR02729 81 NGKDLIIKVPVGTVVYDAETGELIADLVEEGQKFVIAKGGKGGLGNAHFKTSTNRAPRFAEPGEPGEEREVRLELKLLAD 160 (296)
T ss_pred CCCEEEEECCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEE
T ss_conf 87611797587508997789989898617897999986788897776102864468852458898855899997666620
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE----EEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001026632986----8998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK----EFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~----~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
T Consensus 161 VGLvGfPNAGKSTLLs~~S~AkPKiAdYPFTTL~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~G~GLG~~FLKHIERt 240 (296)
T TIGR02729 161 VGLVGFPNAGKSTLLSAISNAKPKIADYPFTTLEPNLGVVRVDDNKYERSFVIADIPGLIEGASEGKGLGHKFLKHIERT 240 (296)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHE
T ss_conf 21035788746888888762788223878745653112898748741688999856861566626887533554575202
Q ss_pred HHHHHHCCCCCC--------CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
Q ss_conf 788752022221--------101346667899877766750598899997465899
Q gi|254780648|r 238 HVLLHIVSALEE--------NVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVD 285 (335)
Q Consensus 238 ~vLl~VVD~s~~--------d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~ 285 (335)
T Consensus 241 ~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~~ 296 (296)
T TIGR02729 241 RLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLLD 296 (296)
T ss_pred EEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCC
T ss_conf 66887980687534242898889999999999975087362780799986067789