HHsearch alignment for GI: 254780648 and conserved domain: TIGR03598
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.94 E-value=1.1e-27 Score=187.66 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=103.5
Q ss_pred ECEEEEECCCCCCCEEEEEECCCC--CHHHHHHHCCCEECCEEEEECCEEEEEECCCCC-CCCCCCC--CCC---HHHHH
Q ss_conf 011244216777530354101454--012121100000010266329868998226421-2473116--775---12344
Q gi|254780648|r 160 ADIGIIGLPNAGKSTFLASVTRAK--PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI-IKNAHQG--AGI---GDRFL 231 (335)
Q Consensus 160 aDVglVG~PNaGKSTLln~ls~ak--~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl-IegA~~~--~gl---G~~FL 231 (335)
T Consensus 19 p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~---~~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~~~~ 95 (179)
T TIGR03598 19 PEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFF---EVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 95 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEE---EECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 789998699988899999986898558970899736602320---10473699977760211278888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-----CCCEEE
Q ss_conf 333335788752022221101346667899877766750598899997465899889999999999862-----994899
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQC-----GQVPFE 306 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~-----~~~vi~ 306 (335)
T Consensus 96 ~~~~~l~~villiDa~~gl~~~D~~i~-~~l~~-----~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 96 RGRENLKGVVLLMDIRHPLKELDLEML-EWLDE-----RGIPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHHHHHHCEEEEEECCCCCCHHHHHHH-HHHHH-----CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 998864302898743779989999999-99997-----599889999781306989999999999999733668894899
Q ss_pred EECCCCCCHH
Q ss_conf 9888788999
Q gi|254780648|r 307 FSSITGHGIP 316 (335)
Q Consensus 307 ISA~tg~GI~ 316 (335)
T Consensus 170 ISA~~g~GID 179 (179)
T TIGR03598 170 FSSLKKTGIE 179 (179)
T ss_pred EECCCCCCCC
T ss_conf 9799983879