HHsearch alignment for GI: 254780648 and conserved domain: cd00876

>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.67  E-value=2e-16  Score=119.35  Aligned_cols=156  Identities=12%  Similarity=0.109  Sum_probs=107.2

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             12442167775303541014540121211000000102663298--6899822642124731167751234433333578
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV  239 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v  239 (335)
T Consensus         2 i~ivG~~~vGKTsli~r~~~~~f-~~~~~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~---~~~~a~~   73 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKGTF-VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE----FSAMRDL---YIRQGDG   73 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---HHHHCCE
T ss_conf             99999699679999999961959-98778830048999999766999999997999623----5578899---9764368


Q ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf             87520222211013466678998777667505988999974658998899-99999999862994899988878899999
Q gi|254780648|r  240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQI  318 (335)
Q Consensus       240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~eL  318 (335)
T Consensus        74 ~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~V~~~e~~~~a~~~~~~y~e~Sak~g~nV~e~  152 (160)
T cd00876          74 FILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEV  152 (160)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf             99973289878999999999999997287-88629999974562230789999999999984997999847989498999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780648|r  319 LECLHDKI  326 (335)
Q Consensus       319 ~~~I~e~L  326 (335)
T Consensus       153 F~~i~~~i  160 (160)
T cd00876         153 FKLLVREI  160 (160)
T ss_pred             HHHHHHHC
T ss_conf             99999729