HHsearch alignment for GI: 254780648 and conserved domain: cd00882
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.69 E-value=4.6e-17 Score=123.24 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=105.1
Q ss_pred EEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEEC--CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 44216777530354101454012121100000010266329--8689982264212473116775123443333357887
Q gi|254780648|r 164 IIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEG--YKEFILADIPGIIKNAHQGAGIGDRFLKHTERTHVLL 241 (335)
Q Consensus 164 lVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~--~~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~vLl 241 (335)
T Consensus 1 vvG~~~~GKSsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~---~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL----R---RLYYRGADGII 73 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHH----H---HHHHHHCCEEE
T ss_conf 9294996889999999719888764687157899999999999999999985895115678----9---99975357999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH--HHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 520222211013466678998777667505988999974658998899999--999998629948999888788999999
Q gi|254780648|r 242 HIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK--KNELATQCGQVPFEFSSITGHGIPQIL 319 (335)
Q Consensus 242 ~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~--~~~l~~~~~~~vi~ISA~tg~GI~eL~ 319 (335)
T Consensus 74 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 152 (157)
T cd00882 74 LVYDVTDRESFENVKEWLLLILI-NKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELF 152 (157)
T ss_pred EEEECCCHHHHHHHHHHHHHHHH-HHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
T ss_conf 99865888889999999999999-75258984999985356154066889999999998789869998478883999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780648|r 320 ECLH 323 (335)
Q Consensus 320 ~~I~ 323 (335)
T Consensus 153 ~~i~ 156 (157)
T cd00882 153 EELA 156 (157)
T ss_pred HHHH
T ss_conf 9985