HHsearch alignment for GI: 254780648 and conserved domain: cd01854
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.95 E-value=6.8e-05 Score=49.48 Aligned_cols=54 Identities=24% Similarity=0.260 Sum_probs=29.0
Q ss_pred EEEEECCCCCCCEEEEEECCC-CCH---HHHHH----HCCCEECCEEEEECCEEEEEECCCCCCC
Q ss_conf 124421677753035410145-401---21211----0000001026632986899822642124
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRA-KPK---IADYP----FTTLYPNLGIVKEGYKEFILADIPGIIK 218 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~a-k~k---Ia~yp----FTT~~P~lGvv~~~~~~~~i~D~PGlIe 218 (335)
T Consensus 164 ~v~~G~SGvGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~L--~~l~~-gg~iiDTPG~r~ 225 (287)
T cd01854 164 SVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPLPG-GGLLIDTPGFRE 225 (287)
T ss_pred EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEEEEE--EECCC-CCEEEECCCCCC
T ss_conf 999889988889999874621212566667760898501415799--99289-958986898763