HHsearch alignment for GI: 254780648 and conserved domain: cd01854
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.47 E-value=0.0011 Score=42.19 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=41.7
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf 0598899997465899889999999999862994899988878899999999999
Q gi|254780648|r 270 RKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHGIPQILECLHD 324 (335)
Q Consensus 270 ~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~GI~eL~~~I~e 324 (335)
T Consensus 108 ~~i~pvivlnK~DL~~~~~~~~~-~~~~~~~gy~v~~~S~~~~~g~~~L~~~l~~ 161 (287)
T cd01854 108 AGIEPVIVLTKADLLDDEEEELE-LVEALALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCEEEEEECHHCCCCHHHHHH-HHHHHCCCCEEEEEECCCCCCHHHHHHHHCC
T ss_conf 79968999986221994899999-9998729984999966898588999987479