HHsearch alignment for GI: 254780648 and conserved domain: cd01856
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.22 E-value=2e-12 Score=95.14 Aligned_cols=52 Identities=33% Similarity=0.469 Sum_probs=35.0
Q ss_pred EEEEECCCCCCCEEEEEECCCC-CHHHHHHHCCCEECCEEEEECCEEEEEECCCCC
Q ss_conf 1244216777530354101454-012121100000010266329868998226421
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAK-PKIADYPFTTLYPNLGIVKEGYKEFILADIPGI 216 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak-~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGl 216 (335)
T Consensus 118 v~ivG~PNVGKSSlIN~L~~~~~~~v~~~pGtTr~~~--~i~~-~~~~~liDTPGI 170 (171)
T cd01856 118 AMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQ--WIKI-SPGIYLLDTPGI 170 (171)
T ss_pred EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEE--EEEE-CCCEEEEECCCC
T ss_conf 9997379876179999974886388769898532667--9996-899999979988