HHsearch alignment for GI: 254780648 and conserved domain: cd01856
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.98 E-value=2.7e-09 Score=76.21 Aligned_cols=93 Identities=14% Similarity=0.166 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 34433333578875202222110134666789987776675059889999746589988999999999986299489998
Q gi|254780648|r 229 RFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335)
Q Consensus 229 ~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335)
T Consensus 12 ~~~~~l~~sDlIl~V~DaR~pl~~~~~-----~l~~~---~~~K~~ilV~NK~DL~~~~~~~~~~~-~~~~~~~~~~~~s 82 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRNP-----LLEKI---LGNKPRIIVLNKADLADPKKTKKWLK-YFESKGEKVLFVN 82 (171)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCH-----HHHHH---HCCCCEEEEEECCCCCCHHHHHHHHH-HHHCCCCCEEEEE
T ss_conf 999999869999999989888876528-----99999---76898899985555589789999999-9980799679984
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8878899999999999998545
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSIR 330 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~r 330 (335)
T Consensus 83 a~~~~g~~~l~~~i~~~~~~~~ 104 (171)
T cd01856 83 AKSGKGVKKLLKAAKKLLKDIE 104 (171)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 2266578999999999735444