HHsearch alignment for GI: 254780648 and conserved domain: cd01859

>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.98  E-value=1.7e-09  Score=77.32  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             33333578875202222110134666789987776675059889999746589988999999999986299489998887
Q gi|254780648|r  232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSIT  311 (335)
Q Consensus       232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~t  311 (335)
T Consensus         8 ~~i~~~D~il~VvDar~p~~~~~~-~l~~~l~~-----~~K~~ilvlNK~Dl~~~~~~~~~~~-~~~~~g~~~i~iSa~~   80 (156)
T cd01859           8 RIIKESDVVLEVLDARDPELTRSR-KLERYVLE-----LGKKLLIVLNKADLVPKEVLEKWKS-IKESEGIPVVYVSAKE   80 (156)
T ss_pred             HHHHHCCEEEEEEECCCCCCCCCH-HHHHHHHH-----CCCCEEEEEECCCCCCHHHHHHHHH-HHHCCCCCEEEEECCC
T ss_conf             999879999999987889998698-99999975-----6993999977555589899999999-9828999737870126


Q ss_pred             CCCHHHHHHHHHHHHHH
Q ss_conf             88999999999999985
Q gi|254780648|r  312 GHGIPQILECLHDKIFS  328 (335)
Q Consensus       312 g~GI~eL~~~I~e~L~~  328 (335)
T Consensus        81 ~~g~~~L~~~i~~~~~~   97 (156)
T cd01859          81 RLGTKILRRTIKELAKI   97 (156)
T ss_pred             CCCHHHHHHHHHHHHCC
T ss_conf             75799999999986023