HHsearch alignment for GI: 254780648 and conserved domain: cd01860
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.62 E-value=6e-16 Score=116.49 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=105.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------6632986--899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
T Consensus 4 ivviGd~~vGKTsli~r~~~~~f-~~~-----~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e----~~~~~~~~---~ 70 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNEF-SEN-----QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQE----RYRSLAPM---Y 70 (163)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCC-----CCCCCCEEEEEEEEEECCEEEEEEEEECCCCH----HHHHHHHH---H
T ss_conf 99999599689999999943989-998-----68866678899999999999999999799971----00278898---8
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
T Consensus 71 ~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~--~~~~iilVgnK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~ 148 (163)
T cd01860 71 YRGAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTG 148 (163)
T ss_pred HCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 5167714999818997999999999999998559--87236775533575650899999999999982997999862659
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89999999999999
Q gi|254780648|r 313 HGIPQILECLHDKI 326 (335)
Q Consensus 313 ~GI~eL~~~I~e~L 326 (335)
T Consensus 149 ~nV~e~F~~l~~~i 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 07899999999858