HHsearch alignment for GI: 254780648 and conserved domain: cd01875

>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.46  E-value=3e-13  Score=100.18  Aligned_cols=152  Identities=15%  Similarity=0.131  Sum_probs=101.4

Q ss_pred             EEEEECCCCCCCEEEEEECCCC------CHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHH--H
Q ss_conf             1244216777530354101454------0121211000000102663298689982264212473116775123443--3
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAK------PKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFLK--H  233 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak------~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FLr--h  233 (335)
T Consensus         6 ivlvGd~~VGKTsli~r~~~~~F~~~y~pti~~-~~~~~~----~i~~~~v~l~iwDtaG~e~---------~~~~~~~~   71 (191)
T cd01875           6 CVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFD-NYSAQT----AVDGRTVSLNLWDTAGQEE---------YDRLRTLS   71 (191)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCE-EEEEEE----EECCEEEEEEEEECCCCCC---------HHHHHHHH
T ss_conf             999999998999999999729999864662100-046789----9999999999985888700---------35677877


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH-------------HHHHHHHHH
Q ss_conf             33357887520222211013466-6789987776675059889999746589988999-------------999999986
Q gi|254780648|r  234 TERTHVLLHIVSALEENVQAAYQ-CILDELSAYNSELRKKIEIVGLSQIDTVDSDTLA-------------RKKNELATQ  299 (335)
Q Consensus       234 Ier~~vLl~VVD~s~~d~~~~~~-~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~-------------~~~~~l~~~  299 (335)
T Consensus        72 ~~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~---~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~~a~~  148 (191)
T cd01875          72 YPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP---NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQ  148 (191)
T ss_pred             HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             44786899998579778899999999999997096---997899988801023457788877641375569999999998


Q ss_pred             CC-CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             29-94899988878899999999999998545
Q gi|254780648|r  300 CG-QVPFEFSSITGHGIPQILECLHDKIFSIR  330 (335)
Q Consensus       300 ~~-~~vi~ISA~tg~GI~eL~~~I~e~L~~~r  330 (335)
T Consensus       149 ~~~~~y~EtSAkt~~nV~e~F~~l~k~il~~~  180 (191)
T cd01875         149 IHAVKYLECSALNQDGVKEVFAEAVRAVLNPT  180 (191)
T ss_pred             HCCCEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             09988999068989698999999999980789