HHsearch alignment for GI: 254780648 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=100.00 E-value=9.3e-38 Score=248.73 Aligned_cols=160 Identities=25% Similarity=0.397 Sum_probs=128.9
Q ss_pred EECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEE-CCEEEEEECCCCCCCCCCCCCCCHHHH---HHHH
Q ss_conf 301124421677753035410145401212110000001026632-986899822642124731167751234---4333
Q gi|254780648|r 159 IADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKE-GYKEFILADIPGIIKNAHQGAGIGDRF---LKHT 234 (335)
Q Consensus 159 iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~-~~~~~~i~D~PGlIegA~~~~glG~~F---LrhI 234 (335)
T Consensus 41 ~p~VaivG~PNvGKSTLlN~L~g~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~i~~~p--~~lie~~~~tle~i 118 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTLEEV 118 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCC--HHHHHHHHHHHHHH
T ss_conf 9879998899998999999994899634156776457636689956997799983686446783--78999999999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 33578875202222110134666789987776675059889999746589988999999999986299489998887889
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
T Consensus 119 ~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l--~~~~k~~i~V~NKiDl~~~~~~~~~----~~~~~~~~i~ISA~~g~G 192 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKEL--GAEDIPMILVLNKIDLLDDEELEER----LEAGRPDAVFISAKTGEG 192 (204)
T ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHHHH--CCCCCCEEEEEECCCCCCCHHHHHH----HHHCCCCEEEEECCCCCC
T ss_conf 7398999999799853667799999999980--6555760788867047995758999----970899879998868949
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780648|r 315 IPQILECLHDKI 326 (335)
Q Consensus 315 I~eL~~~I~e~L 326 (335)
T Consensus 193 id~L~~~I~e~L 204 (204)
T cd01878 193 LDELLEAIEELL 204 (204)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999559