HHsearch alignment for GI: 254780648 and conserved domain: cd01884

>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.34  E-value=4.9e-12  Score=92.79  Aligned_cols=148  Identities=22%  Similarity=0.283  Sum_probs=87.3

Q ss_pred             CEEEEECCCCCCCEEEEEECCCCCHH-----HHHH-----------HCCCEECCEE--EEECCEEEEEECCCCCCCCCCC
Q ss_conf             11244216777530354101454012-----1211-----------0000001026--6329868998226421247311
Q gi|254780648|r  161 DIGIIGLPNAGKSTFLASVTRAKPKI-----ADYP-----------FTTLYPNLGI--VKEGYKEFILADIPGIIKNAHQ  222 (335)
Q Consensus       161 DVglVG~PNaGKSTLln~ls~ak~kI-----a~yp-----------FTT~~P~lGv--v~~~~~~~~i~D~PGlIegA~~  222 (335)
T Consensus         4 Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~--~~~~~~~~~~~~~~~IDtPGH------   75 (195)
T cd01884           4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITIN--TAHVEYETANRHYAHVDCPGH------   75 (195)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCC--CEEEEEECCCEEEEECCCCCH------
T ss_conf             999996058869899999999886634444112001005466650588614--418999608816996268960------


Q ss_pred             CCCCHHHHHHHHHH----HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH----HH
Q ss_conf             67751234433333----57887520222211013466678998777667505988999974658998899999----99
Q gi|254780648|r  223 GAGIGDRFLKHTER----THVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTLARK----KN  294 (335)
Q Consensus       223 ~~glG~~FLrhIer----~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~~~~----~~  294 (335)
T Consensus        76 -----~dF~~~~i~g~~~~D~aiLVVdA~eG-v~~QT~eh---~~l-a~~lgi~~iiV~iNK~D~~~~~~~~~~v~~ei~  145 (195)
T cd01884          76 -----ADYIKNMITGAAQMDGAILVVSATDG-PMPQTREH---LLL-ARQVGVPYIVVFLNKADMVDDEELLELVEMEVR  145 (195)
T ss_pred             -----HHHHHHHHHHHHHCCEEEEEEECCCC-CCHHHHHH---HHH-HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             -----77888998635113626899852778-74789999---999-998099962799968778987899999999999


Q ss_pred             HHHHHCC-----CCEEEEECCCCC----------CHHHHHHHHHHHH
Q ss_conf             9998629-----948999888788----------9999999999999
Q gi|254780648|r  295 ELATQCG-----QVPFEFSSITGH----------GIPQILECLHDKI  326 (335)
Q Consensus       295 ~l~~~~~-----~~vi~ISA~tg~----------GI~eL~~~I~e~L  326 (335)
T Consensus       146 ~~l~~~g~~~~~~p~ip~Sa~~g~~~~~~~~~~~~i~~Lldai~~~i  192 (195)
T cd01884         146 ELLSKYGFDGDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYI  192 (195)
T ss_pred             HHHHHCCCCCCCCEEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             99984299955682999773875357888755369999999999648