HHsearch alignment for GI: 254780648 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.90 E-value=2.3e-23 Score=161.49 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=101.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE---EEEECCEEEEEECCCCCCCCCCCCCCCHHHHH--H--HH
Q ss_conf 12442167775303541014540121211000000102---66329868998226421247311677512344--3--33
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG---IVKEGYKEFILADIPGIIKNAHQGAGIGDRFL--K--HT 234 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG---vv~~~~~~~~i~D~PGlIegA~~~~glG~~FL--r--hI 234 (335)
T Consensus 3 VaivG~~n~GKSTL~n~L~~~~~~~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh-----~------~f~~~~~~~~ 71 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGH-----E------AFTNMRARGA 71 (168)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEECCCCEEEECEEEEEEEECCCCEEEEEECCCC-----H------HHHHHHHHHH
T ss_conf 9999489985989999985867504516981687153999988258871899989981-----6------7799999998
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH--HHHHHHHHHHHH----HC--CCCEEE
Q ss_conf 3357887520222211013466678998777667505988999974658998--899999999998----62--994899
Q gi|254780648|r 235 ERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDS--DTLARKKNELAT----QC--GQVPFE 306 (335)
Q Consensus 235 er~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~--e~~~~~~~~l~~----~~--~~~vi~ 306 (335)
T Consensus 72 ~~aD~~ilvvda~~g~~~~~~~-~~~~l~~-----~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIp 145 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQTIE-AIKLAKA-----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVP 145 (168)
T ss_pred HHCCEEEEEEECCCCCCHHHHH-HHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEE
T ss_conf 6268899998646675458999-9999987-----699789999893089879899999999975452455289875999
Q ss_pred EECCCCCCHHHHHHHHHHHHH
Q ss_conf 988878899999999999998
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIF 327 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~ 327 (335)
T Consensus 146 vSA~tG~gi~~L~~~i~~~a~ 166 (168)
T cd01887 146 TSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred EECCCCCCHHHHHHHHHHHHH
T ss_conf 989999899999999999971