HHsearch alignment for GI: 254780648 and conserved domain: cd01895
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=3.4e-34 Score=227.14 Aligned_cols=159 Identities=25% Similarity=0.315 Sum_probs=123.8
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCH-HHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCC----HHHHHHHHH
Q ss_conf 1124421677753035410145401-21211000000102663298689982264212473116775----123443333
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPK-IADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGI----GDRFLKHTE 235 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~k-Ia~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~gl----G~~FLrhIe 235 (335)
T Consensus 4 ~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~i~ 83 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIE 83 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999899998999999983898444349999157332899999998899985788421344210688999999999998
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH--HHHHHHHHHHHC----CCCEEEEEC
Q ss_conf 35788752022221101346667899877766750598899997465899889--999999999862----994899988
Q gi|254780648|r 236 RTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT--LARKKNELATQC----GQVPFEFSS 309 (335)
Q Consensus 236 r~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~--~~~~~~~l~~~~----~~~vi~ISA 309 (335)
T Consensus 84 ~~dvil~viDa~~~~~~~d~-~i~~~l~~-----~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA 157 (174)
T cd01895 84 RADVVLLVIDATEGITEQDL-RIAGLILE-----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA 157 (174)
T ss_pred HCCCEEEEEECCCCCCHHHH-HHHHHHHH-----CCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 42865899758989988999-99999998-----5998699985675267647789999999998734168992899974
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 8788999999999999
Q gi|254780648|r 310 ITGHGIPQILECLHDK 325 (335)
Q Consensus 310 ~tg~GI~eL~~~I~e~ 325 (335)
T Consensus 158 ~~g~Gi~~L~~~I~ei 173 (174)
T cd01895 158 LTGQGVDKLFDAIDEV 173 (174)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 4798999999999986