HHsearch alignment for GI: 254780648 and conserved domain: cd01900
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=5.5e-36 Score=238.00 Aligned_cols=157 Identities=31% Similarity=0.515 Sum_probs=128.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE-----------------EEEEECCCCCCCCCCCCC
Q ss_conf 124421677753035410145401212110000001026632986-----------------899822642124731167
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK-----------------EFILADIPGIIKNAHQGA 224 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~-----------------~~~i~D~PGlIegA~~~~ 224 (335)
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~Ge 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 95647899988999999977998745899777268058996775658899873177651235789985465567752367
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCC----------CHHHHHHHHHHHHHHHHHH--------------------------
Q ss_conf 7512344333335788752022221----------1013466678998777667--------------------------
Q gi|254780648|r 225 GIGDRFLKHTERTHVLLHIVSALEE----------NVQAAYQCILDELSAYNSE-------------------------- 268 (335)
Q Consensus 225 glG~~FLrhIer~~vLl~VVD~s~~----------d~~~~~~~I~~EL~~y~~~-------------------------- 268 (335)
T Consensus 81 GLGN~FL~~Ir~vDai~hVVR~F~d~~I~Hv~g~vDP~rDieiI~~ELiLaDLe~vEKrlekl~K~~k~~dk~~~~e~~~ 160 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGDKEAKAELEL 160 (274)
T ss_pred CCCHHHHHHHHHCCEEEEEHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 65089999987346346532111577301789997979999999999999999999999999887750477778999999
Q ss_pred --------------------------------HCCCCEEEEEECC--CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf --------------------------------5059889999746--589988999999999986299489998887889
Q gi|254780648|r 269 --------------------------------LRKKIEIVGLSQI--DTVDSDTLARKKNELATQCGQVPFEFSSITGHG 314 (335)
Q Consensus 269 --------------------------------L~~Kp~IIVlNKi--Dl~~~e~~~~~~~~l~~~~~~~vi~ISA~tg~G 314 (335)
T Consensus 161 L~ki~~~Le~g~~~r~~~~~~ee~~~i~~l~LLT~KPviyV~Nv~E~d~~~~~~~~~~~~~~~~~~~~~~I~isakiE~E 240 (274)
T cd01900 161 LEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANGNNKVLKVREIAAKEGAEVIPISAKIEAE 240 (274)
T ss_pred HHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH
T ss_conf 99999998679810205689889999986316533875999978867743662889999999766899099978999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780648|r 315 IPQI 318 (335)
Q Consensus 315 I~eL 318 (335)
T Consensus 241 i~~L 244 (274)
T cd01900 241 LAEL 244 (274)
T ss_pred HHCC
T ss_conf 9679