HHsearch alignment for GI: 254780648 and conserved domain: cd03217
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.42 E-value=0.0056 Score=37.86 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=61.7
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHH
Q ss_conf 99999763011244216777530354101454012121100000010266329868998226421247311677512344
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEFILADIPGIIKNAHQGAGIGDRFL 231 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~~i~D~PGlIegA~~~~glG~~FL 231 (335)
T Consensus 19 vsl~v~~Gei~~iiGpnGaGKSTLl~~i~G~~---------~~~~~~G~I~~~g~~i~--~~~~~-~~~~~gi~~~~q~~ 86 (200)
T cd03217 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP---------KYEVTEGEILFKGEDIT--DLPPE-ERARLGIFLAFQYP 86 (200)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHCCCC---------CCCCCCCEEEECCEECC--CCCHH-HHHHCCEEEECCCH
T ss_conf 05688799899999689999999999970777---------77852007999999988--69999-99976948963676
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE----ECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 33333578875202222110134666789987776675059889999----74658998899999999998629948999
Q gi|254780648|r 232 KHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGL----SQIDTVDSDTLARKKNELATQCGQVPFEF 307 (335)
Q Consensus 232 rhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVl----NKiDl~~~e~~~~~~~~l~~~~~~~vi~I 307 (335)
T Consensus 87 ~~~~~~~~~~~-l~~~~~~----LSGGekqrv~iaral~~~P~lllLDEPtsgLD~~~~~~i~~~i~~l~~~-g~tiiii 160 (200)
T cd03217 87 PEIPGVKNADF-LRYVNEG----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE-GKSVLII 160 (200)
T ss_pred HHCCCCCHHHH-HHHHCCC----CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEE
T ss_conf 87079849999-9764636----7999999999999996099999996962269999999999999999857-9999999
Q ss_pred E
Q ss_conf 8
Q gi|254780648|r 308 S 308 (335)
Q Consensus 308 S 308 (335)
T Consensus 161 t 161 (200)
T cd03217 161 T 161 (200)
T ss_pred E
T ss_conf 9