HHsearch alignment for GI: 254780648 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.009 Score=36.64 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.6
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCC
Q ss_conf 9999976301124421677753035410145
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRA 182 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~a 182 (335)
T Consensus 26 is~~i~~Gei~~llG~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 26 FSGVVKPGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 0889809849999989999889999998378