HHsearch alignment for GI: 254780648 and conserved domain: cd03264
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.014 Score=35.50 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=26.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEE
Q ss_conf 11244216777530354101454012121100000010266329868
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKE 207 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~ 207 (335)
T Consensus 27 i~gllGpNGAGKSTll~~i~Gl-----------~~p~sG~i~i~g~~ 62 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL-----------TPPSSGTIRIDGQD 62 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEE
T ss_conf 5999999982399999999759-----------66896299999999