HHsearch alignment for GI: 254780648 and conserved domain: cd03266
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.34 E-value=0.015 Score=35.35 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=29.1
Q ss_pred EEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE
Q ss_conf 9999976301124421677753035410145401212110000001026632986
Q gi|254780648|r 152 IWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK 206 (335)
Q Consensus 152 ~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~ 206 (335)
T Consensus 24 vs~~i~~Gei~gllG~NGaGKSTllk~i~Gl-----------~~p~~G~i~i~G~ 67 (218)
T cd03266 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-----------LEPDAGFATVDGF 67 (218)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCCEEEECCE
T ss_conf 2789859829999999998499999999779-----------7789748999999