>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=95.41 E-value=0.038 Score=32.82 Aligned_cols=143 Identities=17% Similarity=0.256 Sum_probs=68.2 Q ss_pred EEEEEEEEEEECEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCEEE--------------EEECCCC Q ss_conf 68999997630112442167775303541014540121211000000102663298689--------------9822642 Q gi|254780648|r 150 KIIWLKLKLIADIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYKEF--------------ILADIPG 215 (335) Q Consensus 150 ~~~~lelk~iaDVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~~~--------------~i~D~PG 215 (335) T Consensus 18 ~~vsl~i~~Ge~~~ilGpSG~GKSTllr~i~gl-----------~~p~~G~I~i~g~~i~~~~~~~lrr~ig~vfQ~~-~ 85 (242) T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL-----------IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI-G 85 (242) T ss_pred EEEEEEECCCCEEEEECCCCCHHHHHHHHHHCC-----------CCCCCEEEEECCEECCCCCHHHHHCCCEEEECCC-C T ss_conf 302768869989999999995699999999759-----------9998159999999999999789738867991799-7 Q ss_pred CCCC--CCCCCCCHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHHHHHHH-------HHHHHHCCCCEEEEE-- Q ss_conf 1247--31167751234433------333578875202222110134666789987-------776675059889999-- Q gi|254780648|r 216 IIKN--AHQGAGIGDRFLKH------TERTHVLLHIVSALEENVQAAYQCILDELS-------AYNSELRKKIEIVGL-- 278 (335) Q Consensus 216 lIeg--A~~~~glG~~FLrh------Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~-------~y~~~L~~Kp~IIVl-- 278 (335) T Consensus 86 Lfp~ltV~eNi~~~~~~-~~~~~~~~~~rv~ell~~v~L~~~~~~~---~~p~~LSGGqkQRvaiARAl~~~P~ilLlDE 161 (242) T cd03295 86 LFPHMTVEENIALVPKL-LKWPKEKIRERADELLALVGLDPAEFAD---RYPHELSGGQQQRVGVARALAADPPLLLMDE 161 (242) T ss_pred CCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCHHHCC---CCHHHCCHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 58888299999999997-5999999999999999874999301100---7956689999999999999962999999818 Q ss_pred --ECCCCCCHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf --746589988999999999986299489998 Q gi|254780648|r 279 --SQIDTVDSDTLARKKNELATQCGQVPFEFS 308 (335) Q Consensus 279 --NKiDl~~~e~~~~~~~~l~~~~~~~vi~IS 308 (335) T Consensus 162 P~saLD~~~~~~i~~~l~~l~~~~~~T~i~vT 193 (242) T cd03295 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVT 193 (242) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEC T ss_conf 76546989999999999999997599999999

HHsearch alignment for GI: 254780648 and conserved domain: cd03295