HHsearch alignment for GI: 254780648 and conserved domain: cd04104

>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.91  E-value=6.8e-09  Score=73.72  Aligned_cols=157  Identities=18%  Similarity=0.239  Sum_probs=89.3

Q ss_pred             CEEEEECCCCCCCEEEEEECCC---CCHHHH---HHHCCCEECCEEEE-ECCEEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             1124421677753035410145---401212---11000000102663-2986899822642124731167751234433
Q gi|254780648|r  161 DIGIIGLPNAGKSTFLASVTRA---KPKIAD---YPFTTLYPNLGIVK-EGYKEFILADIPGIIKNAHQGAGIGDRFLKH  233 (335)
Q Consensus       161 DVglVG~PNaGKSTLln~ls~a---k~kIa~---ypFTT~~P~lGvv~-~~~~~~~i~D~PGlIegA~~~~glG~~FLrh  233 (335)
T Consensus         3 ~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~e-TT~~~~~--Y~~p~~pnv~lwDlPG~--Gt~~-f-~~~~Yl~~   75 (197)
T cd04104           3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVE-TTMKRTP--YPHPKFPNVTLWDLPGI--GSTA-F-PPDDYLEE   75 (197)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCEE--CCCCCCCCCEEECCCCC--CCCC-C-CHHHHHHH
T ss_conf             799955899868999999868898877758888874-6778620--47999998769728999--9876-5-98999986


Q ss_pred             --HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC-CHH-----------H-HHHHH----H
Q ss_conf             --333578875202222110134666789987776675059889999746589-988-----------9-99999----9
Q gi|254780648|r  234 --TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTV-DSD-----------T-LARKK----N  294 (335)
Q Consensus       234 --Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~-~~e-----------~-~~~~~----~  294 (335)
T Consensus        76 ~~~~~yD~fiiiss--~r-f~~nd~~la~~i~~-----~gK~fyfVRsK~D~dl~n~~~~~p~~f~~e~~L~~IR~~c~~  147 (197)
T cd04104          76 MKFSEYDFFIIISS--TR-FSSNDVKLAKAIQC-----MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE  147 (197)
T ss_pred             CCCCCCCEEEEEEC--CC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             58554578999838--86-41426999999998-----099289998612140005663787665999999999999999


Q ss_pred             HHHHHC--CCCEEEEECCC--CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             999862--99489998887--889999999999999854523
Q gi|254780648|r  295 ELATQC--GQVPFEFSSIT--GHGIPQILECLHDKIFSIRGE  332 (335)
Q Consensus       295 ~l~~~~--~~~vi~ISA~t--g~GI~eL~~~I~e~L~~~r~e  332 (335)
T Consensus       148 ~L~~~gv~~p~VFLvS~~~~~~yDFp~L~~tl~~~Lp~~kr~  189 (197)
T cd04104         148 NLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             HHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999869999998999379822077689999999980898899