HHsearch alignment for GI: 254780648 and conserved domain: cd04107
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=1.6e-15 Score=113.97 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=106.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEEC-C--EEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 12442167775303541014540121211000000102------66329-8--689982264212473116775123443
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEG-Y--KEFILADIPGIIKNAHQGAGIGDRFLK 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~-~--~~~~i~D~PGlIegA~~~~glG~~FLr 232 (335)
T Consensus 3 vvllGd~gVGKTsLi~rf~~~~F-~~~y-----~~Tig~df~~k~i~~~~~~~v~l~iwDtaGqe~----~~~l~~~--- 69 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGIF-SQHY-----KATIGVDFALKVIEWDPNTVVRLQLWDIAGQER----FGGMTRV--- 69 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCCEEEEEEEEECCCCCC----CCCCHHH---
T ss_conf 99999999789999999982999-9988-----887567789989996798199999986899832----2200375---
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCC-CEEEEE
Q ss_conf 333357887520222211013466678998777--667505988999974658998899-9999999986299-489998
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAY--NSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQ-VPFEFS 308 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y--~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~-~vi~IS 308 (335)
T Consensus 70 y~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~v~~ee~~~~a~~~~~~~~~EtS 149 (201)
T cd04107 70 YYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETS 149 (201)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf 55577647999827988999989999999999862137898718998665564112568999999999977998099977
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8878899999999999998545230
Q gi|254780648|r 309 SITGHGIPQILECLHDKIFSIRGEN 333 (335)
Q Consensus 309 A~tg~GI~eL~~~I~e~L~~~r~e~ 333 (335)
T Consensus 150 Aktg~nV~e~F~~l~~~i~~~~~~~ 174 (201)
T cd04107 150 AKEGINIEEAMRFLVKNILANDKNL 174 (201)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 9999498999999999998665333