>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

Probab=99.68 E-value=1.5e-16 Score=120.09 Aligned_cols=160 Identities=17% Similarity=0.217 Sum_probs=113.3 Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335 Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335) Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335) T Consensus 9 IvlvGd~~VGKTSli~r~~~~~F-~~~~~-~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe----~~~~l~~~~---~~~a 79 (199) T cd04110 9 LLIIGDSGVGKSSLLLRFADNTF-SGSYI-TTIGVDFKIRTVEINGERVKLQIWDTAGQE----RFRTITSTY---YRGT 79 (199) T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCCC----CCCCCHHHH---HHCC T ss_conf 99999799888999999950999-99868-975558789999999999999999899981----235352666---4246 Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH Q ss_conf 7887520222211013466678998777667505988999974658998899-999999998629948999888788999 Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIP 316 (335) Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335) T Consensus 80 ~~~ilvyDit~~~Sf~~l~~w~~~i~~~~---~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~~~f~E~SAktg~nV~ 156 (199) T cd04110 80 HGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVE 156 (199) T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHHC---CCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHH T ss_conf 54238971798899999999999999759---987579998855447546999999999999869979998689992989 Q ss_pred HHHHHHHHHHHHHHHHC Q ss_conf 99999999998545230 Q gi|254780648|r 317 QILECLHDKIFSIRGEN 333 (335) Q Consensus 317 eL~~~I~e~L~~~r~e~ 333 (335) T Consensus 157 e~F~~i~~~i~~~~~~~ 173 (199) T cd04110 157 EMFNCITELVLRAKKDN 173 (199) T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999974642

HHsearch alignment for GI: 254780648 and conserved domain: cd04110