HHsearch alignment for GI: 254780648 and conserved domain: cd04114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=3.2e-16 Score=118.12 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=108.5
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH 233 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh 233 (335)
T Consensus 10 ivllGd~~VGKTsli~r~~~~~f-~~~~-----~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~----~~~l~~---~~ 76 (169)
T cd04114 10 IVLIGNAGVGKTCLVRRFTQGLF-PPGQ-----GATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----FRSITQ---SY 76 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCHH---HH
T ss_conf 99999899799999999985989-9986-----77412478999999999999999998999844----451557---77
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r 234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
T Consensus 77 ~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~--~~~~~ilVGNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAktg 154 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKES 154 (169)
T ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 4236645998148988899999999999998689--88638973113434541788999999999988999999868988
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 89999999999999
Q gi|254780648|r 313 HGIPQILECLHDKI 326 (335)
Q Consensus 313 ~GI~eL~~~I~e~L 326 (335)
T Consensus 155 ~nV~e~F~~la~~l 168 (169)
T cd04114 155 DNVEKLFLDLACRL 168 (169)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 08899999999987