HHsearch alignment for GI: 254780648 and conserved domain: cd04114

>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65  E-value=3.2e-16  Score=118.12  Aligned_cols=150  Identities=17%  Similarity=0.160  Sum_probs=108.5

Q ss_pred             EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             12442167775303541014540121211000000102------663298--6899822642124731167751234433
Q gi|254780648|r  162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKH  233 (335)
Q Consensus       162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrh  233 (335)
T Consensus        10 ivllGd~~VGKTsli~r~~~~~f-~~~~-----~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~----~~~l~~---~~   76 (169)
T cd04114          10 IVLIGNAGVGKTCLVRRFTQGLF-PPGQ-----GATIGVDFMIKTVEIKGEKIKLQIWDTAGQER----FRSITQ---SY   76 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCCC----CCCCHH---HH
T ss_conf             99999899799999999985989-9986-----77412478999999999999999998999844----451557---77


Q ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             3335788752022221101346667899877766750598899997465899889-999999999862994899988878
Q gi|254780648|r  234 TERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITG  312 (335)
Q Consensus       234 Ier~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg  312 (335)
T Consensus        77 ~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~--~~~~~ilVGNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAktg  154 (169)
T cd04114          77 YRSANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKES  154 (169)
T ss_pred             HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             4236645998148988899999999999998689--88638973113434541788999999999988999999868988


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             89999999999999
Q gi|254780648|r  313 HGIPQILECLHDKI  326 (335)
Q Consensus       313 ~GI~eL~~~I~e~L  326 (335)
T Consensus       155 ~nV~e~F~~la~~l  168 (169)
T cd04114         155 DNVEKLFLDLACRL  168 (169)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             08899999999987