HHsearch alignment for GI: 254780648 and conserved domain: cd04115
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.56 E-value=1.5e-14 Score=108.08 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=109.8
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHH-
Q ss_conf 12442167775303541014540121211000000102------663298--689982264212473116775123443-
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLK- 232 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLr- 232 (335)
T Consensus 5 iv~lGd~~VGKTsli~r~~~~~F-~~~~-----~~Tig~d~~~k~i~v~~~~v~l~iwDtaG~e~-------~~~s~~~~ 71 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCAGRF-PERT-----EATIGVDFRERTVEIDGERIKVQLWDTAGQER-------FRKSMVQH 71 (170)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC-CCCC-----CCCEEEEEEEEEEEECCEEEEEEEEECCCCHH-------HHHHHHHH
T ss_conf 99999799779999999953988-9987-----88630787899999999999999997788530-------56777899
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECC-
Q ss_conf 33335788752022221101346667899877766750598899997465899889-9999999998629948999888-
Q gi|254780648|r 233 HTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSI- 310 (335)
Q Consensus 233 hIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~- 310 (335)
T Consensus 72 ~~~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~-~~~p~vlVGNK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAK~ 150 (170)
T cd04115 72 YYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKD 150 (170)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCEEEEECCCC
T ss_conf 845773579995047476799999999999986588-8997999999821341178799999999997799999988899
Q ss_pred --CCCCHHHHHHHHHHHHHH
Q ss_conf --788999999999999985
Q gi|254780648|r 311 --TGHGIPQILECLHDKIFS 328 (335)
Q Consensus 311 --tg~GI~eL~~~I~e~L~~ 328 (335)
T Consensus 151 ~~~~~nV~~~F~~la~~i~~ 170 (170)
T cd04115 151 PSENDHVEAIFMTLAHKLKS 170 (170)
T ss_pred CCCCCCHHHHHHHHHHHHCC
T ss_conf 85170889999999999609