HHsearch alignment for GI: 254780648 and conserved domain: cd04118
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70 E-value=4.2e-17 Score=123.49 Aligned_cols=159 Identities=13% Similarity=0.154 Sum_probs=113.2
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECC--EEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1244216777530354101454012121100000010--2663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNL--GIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~l--Gvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
T Consensus 3 ivlvGd~~VGKTsLi~r~~~~~f~~~~y~-~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~----~~l~~---~y~~~a 74 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHRFLVGPYQ-NTIGAAFVAKRMVVGERVVTLGIWDTAGSERY----EAMSR---IYYRGA 74 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCCC-CCCEEEEEEEEEEECCEEEEEEEEECCCCHHH----HHHHH---HHHCCC
T ss_conf 99999699879999999985979989978-76305889999999999999999919997312----35579---883477
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHH-----HHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 78875202222110134666789987776675059889999746589988-----9999999999862994899988878
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSD-----TLARKKNELATQCGQVPFEFSSITG 312 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e-----~~~~~~~~l~~~~~~~vi~ISA~tg 312 (335)
T Consensus 75 ~~~ilvydit~~~Sf~~i~~W~~~i~~~~~---~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~~~~E~SAktg 151 (193)
T cd04118 75 KAAIVCYDLTDSSSFERAKFWVKELQNLEE---HCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTG 151 (193)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHCC---CCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 445788306987999989999999997489---99979997746632201666446899999999980996999838989
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999985452
Q gi|254780648|r 313 HGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 313 ~GI~eL~~~I~e~L~~~r~ 331 (335)
T Consensus 152 ~nV~e~F~~la~~i~~~~~ 170 (193)
T cd04118 152 QNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 3989999999999997652