HHsearch alignment for GI: 254780648 and conserved domain: cd04127

>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.61  E-value=2.3e-15  Score=112.94  Aligned_cols=154  Identities=19%  Similarity=0.187  Sum_probs=106.9

Q ss_pred             CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEEC------------CEEEEEECCCCCCCCCCC
Q ss_conf             1124421677753035410145401212110000001026------6329------------868998226421247311
Q gi|254780648|r  161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEG------------YKEFILADIPGIIKNAHQ  222 (335)
Q Consensus       161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~------------~~~~~i~D~PGlIegA~~  222 (335)
T Consensus         6 KivvvGd~~VGKTsli~r~~~~~f~-~~-----y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe----~   75 (180)
T cd04127           6 KFLALGDSGVGKTSFLYQYTDNKFN-PK-----FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE----R   75 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC-CC-----CCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCH----H
T ss_conf             9999999998889999999619589-98-----688432268899999847655444578858999999898863----0


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCC
Q ss_conf             677512344333335788752022221101346667899877766750598899997465899889-9999999998629
Q gi|254780648|r  223 GAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCG  301 (335)
Q Consensus       223 ~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~  301 (335)
T Consensus        76 ~~~l~~---~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~-~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~  151 (180)
T cd04127          76 FRSLTT---AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKYG  151 (180)
T ss_pred             HHHHHH---HHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCC
T ss_conf             478889---998754365899968988999989999999998546-6898578750323667508889999999999849


Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             948999888788999999999999985
Q gi|254780648|r  302 QVPFEFSSITGHGIPQILECLHDKIFS  328 (335)
Q Consensus       302 ~~vi~ISA~tg~GI~eL~~~I~e~L~~  328 (335)
T Consensus       152 ~~~~E~SAk~g~nV~e~F~~l~~~i~~  178 (180)
T cd04127         152 IPYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             979998037791989999999999997