HHsearch alignment for GI: 254780648 and conserved domain: cd04127
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.61 E-value=2.3e-15 Score=112.94 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=106.9
Q ss_pred CEEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEE------EEEC------------CEEEEEECCCCCCCCCCC
Q ss_conf 1124421677753035410145401212110000001026------6329------------868998226421247311
Q gi|254780648|r 161 DIGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGI------VKEG------------YKEFILADIPGIIKNAHQ 222 (335)
Q Consensus 161 DVglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGv------v~~~------------~~~~~i~D~PGlIegA~~ 222 (335)
T Consensus 6 KivvvGd~~VGKTsli~r~~~~~f~-~~-----y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe----~ 75 (180)
T cd04127 6 KFLALGDSGVGKTSFLYQYTDNKFN-PK-----FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE----R 75 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC-CC-----CCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCH----H
T ss_conf 9999999998889999999619589-98-----688432268899999847655444578858999999898863----0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCC
Q ss_conf 677512344333335788752022221101346667899877766750598899997465899889-9999999998629
Q gi|254780648|r 223 GAGIGDRFLKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCG 301 (335)
Q Consensus 223 ~~glG~~FLrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~ 301 (335)
T Consensus 76 ~~~l~~---~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~-~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~ 151 (180)
T cd04127 76 FRSLTT---AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEEQAKALADKYG 151 (180)
T ss_pred HHHHHH---HHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCC
T ss_conf 478889---998754365899968988999989999999998546-6898578750323667508889999999999849
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 948999888788999999999999985
Q gi|254780648|r 302 QVPFEFSSITGHGIPQILECLHDKIFS 328 (335)
Q Consensus 302 ~~vi~ISA~tg~GI~eL~~~I~e~L~~ 328 (335)
T Consensus 152 ~~~~E~SAk~g~nV~e~F~~l~~~i~~ 178 (180)
T cd04127 152 IPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 979998037791989999999999997