HHsearch alignment for GI: 254780648 and conserved domain: cd04131
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=7.7e-13 Score=97.68 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=101.1
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECCE--EEEEECCCCCCCCCCCCCCCHHHHHH--HHHHH
Q ss_conf 124421677753035410145401212110000001026632986--89982264212473116775123443--33335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGYK--EFILADIPGIIKNAHQGAGIGDRFLK--HTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~~--~~~i~D~PGlIegA~~~~glG~~FLr--hIer~ 237 (335)
T Consensus 4 ivlvGd~~VGKTsLi~r~~~~~F~-~~y~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~---------~~~l~~~~y~~a 73 (178)
T cd04131 4 IVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPY---------YDNVRPLCYPDS 73 (178)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHH---------HCCHHHHHHCCC
T ss_conf 999999997789999999639999-9857856888899999999999999996898742---------110366773468
Q ss_pred HHHHHHCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-------------HHHHHHHHHHHCCCC
Q ss_conf 788752022221101346-667899877766750598899997465899889-------------999999999862994
Q gi|254780648|r 238 HVLLHIVSALEENVQAAY-QCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-------------LARKKNELATQCGQV 303 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~-~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-------------~~~~~~~l~~~~~~~ 303 (335)
T Consensus 74 ~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~---~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~A~~~ga~ 150 (178)
T cd04131 74 DAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAE 150 (178)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 7899997379878899999999999998687---9988999985436644455667764467776899999999974998
Q ss_pred -EEEEECCCCC-CHHHHHHHHHHHHH
Q ss_conf -8999888788-99999999999998
Q gi|254780648|r 304 -PFEFSSITGH-GIPQILECLHDKIF 327 (335)
Q Consensus 304 -vi~ISA~tg~-GI~eL~~~I~e~L~ 327 (335)
T Consensus 151 ~y~EtSAktg~ngV~evF~~a~~~~l 176 (178)
T cd04131 151 IYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99997848687398999999999984