HHsearch alignment for GI: 254780648 and conserved domain: cd04139
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=1e-15 Score=115.11 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=105.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEEC-CEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 124421677753035410145401212110000001-02663298--689982264212473116775123443333357
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPN-LGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTH 238 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~-lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~ 238 (335)
T Consensus 3 vvlvGd~~VGKTsli~r~~~~~F-~~~y~-pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~----~~~l~~~---~~~~a~ 73 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEF-VEDYE-PTKADSYRKKVVLDGEDVQLNILDTAGQED----YAAIRDN---YHRSGE 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCCC-CCCCCEEEEEEEECCEEEEEEEEECCCCHH----HHHHHHH---HHHHCC
T ss_conf 99999999889999999971989-87748-854416899999999999999998988662----4889999---886376
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 887520222211013466678998777667505988999974658998899-9999999986299489998887889999
Q gi|254780648|r 239 VLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITGHGIPQ 317 (335)
Q Consensus 239 vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg~GI~e 317 (335)
T Consensus 74 ~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~-~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~E~SAk~g~nV~~ 152 (164)
T cd04139 74 GFLLVFSITDMESFTATAEFREQILRVKDD-DNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEK 152 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 889999779778899999999999986087-8863698733032334177899999999998399899982687908899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999985
Q gi|254780648|r 318 ILECLHDKIFS 328 (335)
Q Consensus 318 L~~~I~e~L~~ 328 (335)
T Consensus 153 ~F~~l~~~i~~ 163 (164)
T cd04139 153 AFYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999972