HHsearch alignment for GI: 254780648 and conserved domain: cd04142
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.50 E-value=5.3e-14 Score=104.73 Aligned_cols=161 Identities=11% Similarity=0.120 Sum_probs=107.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE------EEEECCE--EEEEECCCCCCCCCCCCCCCHHHH---
Q ss_conf 12442167775303541014540121211000000102------6632986--899822642124731167751234---
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG------IVKEGYK--EFILADIPGIIKNAHQGAGIGDRF--- 230 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG------vv~~~~~--~~~i~D~PGlIegA~~~~glG~~F--- 230 (335)
T Consensus 3 ivvlG~~gVGKTsli~rf~~~~F-~~~y-----~pTig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~-t--agqe~~~~ 73 (198)
T cd04142 3 VAVLGAPGVGKTAIVRQFLAQEF-PEEY-----IPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG-T--AGQEWMDP 73 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC-CCCC-----CCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC-C--CCHHHHHH
T ss_conf 99999799899999999971988-8874-----78466167899999999999999995877304555-6--52123555
Q ss_pred -HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH-HHCCCCEEEEEECCCCCCHHHHH-HHHHHHHHH-CCCCEEE
Q ss_conf -4333335788752022221101346667899877766-75059889999746589988999-999999986-2994899
Q gi|254780648|r 231 -LKHTERTHVLLHIVSALEENVQAAYQCILDELSAYNS-ELRKKIEIVGLSQIDTVDSDTLA-RKKNELATQ-CGQVPFE 306 (335)
Q Consensus 231 -LrhIer~~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~-~L~~Kp~IIVlNKiDl~~~e~~~-~~~~~l~~~-~~~~vi~ 306 (335)
T Consensus 74 r~~~ir~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~~~~~~~~a~~~~~~~f~E 153 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE 153 (198)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 64401468889999988677888999999999999851479998289983454310035688999999998519976998
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9888788999999999999985452
Q gi|254780648|r 307 FSSITGHGIPQILECLHDKIFSIRG 331 (335)
Q Consensus 307 ISA~tg~GI~eL~~~I~e~L~~~r~ 331 (335)
T Consensus 154 tSAK~~~nV~~~F~~lvr~i~~~~~ 178 (198)
T cd04142 154 CSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 8788996989999999999986044