HHsearch alignment for GI: 254780648 and conserved domain: cd04146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.63 E-value=9.4e-16 Score=115.32 Aligned_cols=159 Identities=14% Similarity=0.166 Sum_probs=108.7
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCEEEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102663298--6899822642124731167751234433333578
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLGIVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERTHV 239 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lGvv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~~v 239 (335)
T Consensus 2 iv~vGd~~VGKTsli~rf~~~~-f~~~y~~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~------~~~~~~~~~a~~ 74 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKR-FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLERSIRWADG 74 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCH------HHHHHHCCCCCE
T ss_conf 9999989977899999997498-998759955630579999999999999992898501220------125543045878
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH-HHHHHHHHHHCCCCEEEEECCCC-CCHHH
Q ss_conf 87520222211013466678998777667505988999974658998899-99999999862994899988878-89999
Q gi|254780648|r 240 LLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDTL-ARKKNELATQCGQVPFEFSSITG-HGIPQ 317 (335)
Q Consensus 240 Ll~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~~-~~~~~~l~~~~~~~vi~ISA~tg-~GI~e 317 (335)
T Consensus 75 ~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~Vs~ee~~~~a~~~~~~f~E~SAk~~~~~V~~ 154 (165)
T cd04146 75 FVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS 154 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHH
T ss_conf 99998658889999999999999998466999539984455452103677999999999981998999752087826999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999998
Q gi|254780648|r 318 ILECLHDKIF 327 (335)
Q Consensus 318 L~~~I~e~L~ 327 (335)
T Consensus 155 ~F~~l~~~i~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHC
T ss_conf 9999999966