HHsearch alignment for GI: 254780648 and conserved domain: cd04148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.60 E-value=1.9e-15 Score=113.51 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=108.9
Q ss_pred EEEEECCCCCCCEEEEEECCCCCHHHHHHHCCCEECCE--EEEECC--EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12442167775303541014540121211000000102--663298--68998226421247311677512344333335
Q gi|254780648|r 162 IGIIGLPNAGKSTFLASVTRAKPKIADYPFTTLYPNLG--IVKEGY--KEFILADIPGIIKNAHQGAGIGDRFLKHTERT 237 (335)
Q Consensus 162 VglVG~PNaGKSTLln~ls~ak~kIa~ypFTT~~P~lG--vv~~~~--~~~~i~D~PGlIegA~~~~glG~~FLrhIer~ 237 (335)
T Consensus 3 VvllGd~gVGKTSLi~rf~~~~f~~~~y~-~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~-e~~~-----~~~~~--~~~a 73 (221)
T cd04148 3 VVMLGSPGVGKSSLASQFTSGEYDDHAYD-ASGDDDTYERTVSVDGEESTLVVIDHWEQ-EMWT-----EDSCM--QYQG 73 (221)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCC-CCCCEEEEEEEEEECCEEEEEEEEECCCC-HHHH-----HHHHH--HHCC
T ss_conf 99999899709999999981986986678-74424889999999999989999989873-1266-----66565--3068
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 788752022221101346667899877766750598899997465899889-9999999998629948999888788999
Q gi|254780648|r 238 HVLLHIVSALEENVQAAYQCILDELSAYNSELRKKIEIVGLSQIDTVDSDT-LARKKNELATQCGQVPFEFSSITGHGIP 316 (335)
Q Consensus 238 ~vLl~VVD~s~~d~~~~~~~I~~EL~~y~~~L~~Kp~IIVlNKiDl~~~e~-~~~~~~~l~~~~~~~vi~ISA~tg~GI~ 316 (335)
T Consensus 74 da~ilVYdvtdr~SF~~~~~~~~~l~~~~~-~~~~piILVGNK~DL~~~R~Vs~eEg~~~A~~~~~~F~EtSAk~~~NV~ 152 (221)
T cd04148 74 DAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVD 152 (221)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCCHH
T ss_conf 689999964667788889999999998648-9995199985356668638999999999999859989994579994989
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999998
Q gi|254780648|r 317 QILECLHDKIF 327 (335)
Q Consensus 317 eL~~~I~e~L~ 327 (335)
T Consensus 153 elF~~lvrqIr 163 (221)
T cd04148 153 ELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998